Home Gene search Metabolite search PRIMe
 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
 Highlight filters
Keyword
AGI locus IDs

Choosing cell X:" 0 " Y:" 16 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adp000917 LinkIcon Positive ATH59p00292 LinkIcon PT110970 LinkIcon 0.981
DL-Pipecolinic acid; MS2; Q-Tof; [M+H]+
   DL-Pipecolinic acid
  HomoPro
  pipecolinic acid
  pipecolate
  Homoproline
  6-carboxypiperidine
  pipecolic acid
  2-piperidinecarboxylic acid
  piperidine-2-carboxylic acid
  Hexahydropicolinic acid
  dihydrobaikiane
  hexahydropicolinic acid
  (2S)-piperidine-2-carboxylic acid
PT102810 LinkIcon 0.974
L-Lysine monohydrochloride; MS2; Q-Tof; [M+H]+
   L-Lysine monohydrochloride
  Lys
  (S)-2,6-Diaminohexanoic acid monohydrochloride
  Lysine acid
  (2S)-2,6-diaminohexanoic acid
  L-Glutamine
  Q
  Gln
  L-Glutamic acid 5-amide
  (S)-2,5-Diamino-5-oxopentanoic acid
  L-2-Aminoglutaramic acid
  Levoglutamide
  Cebrogen
  Glumin
  (2S)-2,5-diamino-5-oxopentanoic acid
PT107190 LinkIcon 0.968
L-(+)-Lysine; MS2; Q-Tof; [M+H]+
   L-(+)-Lysine
  Lys
  Lysine acid
  2,6-diaminohexanoic acid
  (2S)-2,6-diaminohexanoic acid
PS109702 LinkIcon 0.967
DL-Pipecolinic acid; MS2; QqQ; positive; CE 20 V
   DL-Pipecolinic acid
  HomoPro
  pipecolinic acid
  pipecolate
  Homoproline
  6-carboxypiperidine
  pipecolic acid
  2-piperidinecarboxylic acid
  piperidine-2-carboxylic acid
  Hexahydropicolinic acid
  dihydrobaikiane
  hexahydropicolinic acid
PT102870 LinkIcon 0.965
L-Pyroglutamic acid; MS2; Q-Tof; [M+H]+
   L-Pyroglutamic acid
  pGlu
  pyroGlu
  Pyroglutamate
  Pidolic acid
  L-Glutimic acid
  L-5-Oxoproline
  (S)-(?)-2-Pyrrolidone-5-carboxylic acid
  (S)-5-Oxo-2-pyrrolidinecarboxylic acid
  L-a-Aminoglutaric Acid Lactam
  L-5-Oxo-2-pyrrolidinecarboxylic acid
  Pidolic acid
  (2S)-5-oxopyrrolidine-2-carboxylic acid
PM000932 LinkIcon 0.962
L-Lysine; MS2; QqQ; M+H; 22
   L-Lysine
ATH62p00293 LinkIcon PT102870 LinkIcon 0.958
L-Pyroglutamic acid; MS2; Q-Tof; [M+H]+
   L-Pyroglutamic acid
  pGlu
  pyroGlu
  Pyroglutamate
  Pidolic acid
  L-Glutimic acid
  L-5-Oxoproline
  (S)-(?)-2-Pyrrolidone-5-carboxylic acid
  (S)-5-Oxo-2-pyrrolidinecarboxylic acid
  L-a-Aminoglutaric Acid Lactam
  L-5-Oxo-2-pyrrolidinecarboxylic acid
  Pidolic acid
  (2S)-5-oxopyrrolidine-2-carboxylic acid
ATH59p00292 LinkIcon PS104603 LinkIcon 0.956
N-Acetyl-DL-glutamic acid; MS2; QqQ; positive; CE 30 V
   N-Acetyl-DL-glutamic acid
  Ac-Glu
  N-Acetyl-DL-glutamate
  N-Acetylglutamate
  2-(Acetylamino)pentanedioic Acid
  L-saccharopine
  epsilon-N-(L-glutar-2-yl)-L-lysine
  N6-(L-1,3-dicarboxylpropyl)-L-lysine
ATH62p00293 LinkIcon PT110970 LinkIcon 0.956
DL-Pipecolinic acid; MS2; Q-Tof; [M+H]+
   DL-Pipecolinic acid
  HomoPro
  pipecolinic acid
  pipecolate
  Homoproline
  6-carboxypiperidine
  pipecolic acid
  2-piperidinecarboxylic acid
  piperidine-2-carboxylic acid
  Hexahydropicolinic acid
  dihydrobaikiane
  hexahydropicolinic acid
  (2S)-piperidine-2-carboxylic acid
PT102810 LinkIcon 0.955
L-Lysine monohydrochloride; MS2; Q-Tof; [M+H]+
   L-Lysine monohydrochloride
  Lys
  (S)-2,6-Diaminohexanoic acid monohydrochloride
  Lysine acid
  (2S)-2,6-diaminohexanoic acid
PS109702 LinkIcon 0.953
DL-Pipecolinic acid; MS2; QqQ; positive; CE 20 V
   DL-Pipecolinic acid
  HomoPro
  pipecolinic acid
  pipecolate
  Homoproline
  6-carboxypiperidine
  pipecolic acid
  2-piperidinecarboxylic acid
  piperidine-2-carboxylic acid
  Hexahydropicolinic acid
  dihydrobaikiane
  hexahydropicolinic acid
PT107190 LinkIcon 0.949
L-(+)-Lysine; MS2; Q-Tof; [M+H]+
   L-(+)-Lysine
  Lys
  Lysine acid
  2,6-diaminohexanoic acid
  (2S)-2,6-diaminohexanoic acid
ATH59p00292 LinkIcon PS028102 LinkIcon 0.943
L-Lysine monohydrochloride; MS2; QqQ; positive; CE 20 V
   L-Lysine monohydrochloride
  Lys
  (S)-2,6-Diaminohexanoic acid monohydrochloride
  Lysine acid
ATH62p00293 LinkIcon PS071902 LinkIcon 0.941
L-(+)-Lysine; MS2; QqQ; positive; CE 20 V
   L-(+)-Lysine
  Lys
  Lysine acid
  2,6-diaminohexanoic acid
PS028102 LinkIcon 0.939
L-Lysine monohydrochloride; MS2; QqQ; positive; CE 20 V
   L-Lysine monohydrochloride
  Lys
  (S)-2,6-Diaminohexanoic acid monohydrochloride
  Lysine acid
PS050203 LinkIcon 0.936
L-saccharopine; MS2; QqQ; positive; CE 30 V
   L-saccharopine
  epsilon-N-(L-glutar-2-yl)-L-lysine
  N6-(L-1,3-dicarboxylpropyl)-L-lysine
PS104603 LinkIcon 0.933
N-Acetyl-DL-glutamic acid; MS2; QqQ; positive; CE 30 V
   N-Acetyl-DL-glutamic acid
  Ac-Glu
  N-Acetyl-DL-glutamate
  N-Acetylglutamate
  2-(Acetylamino)pentanedioic Acid
PT107480 LinkIcon 0.932
gamma-Glu-Cys; MS2; Q-Tof; [M+H]+
   gamma-Glu-Cys
  L-gamma-Glutamyl-L-cysteine
  Des-Gly-glutathione Reduced Form
  5-L-Glutamyl-L-cysteine
  L-gamma-Glutamylcysteine
  (2S)-2-amino-5-[[(2R)-1-hydroxy-1-oxo-3-sulfanylpropan-2-yl]amino]-5-oxopentanoic acid
ATH07p00553 LinkIcon - -
-
ATH09p00555 LinkIcon - -
-
ATH10p00018 LinkIcon - -
-
ATH11p00293 LinkIcon - -
-
ATH12p00550 LinkIcon - -
-
ATH13p00561 LinkIcon - -
-
ATH57p00292 LinkIcon - -
-
ATH63p00019 LinkIcon - -
-
ATH63p00564 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g09240
nicotianamine synthase 3 Encodes a nicotianamine synthase. nicotianamine synthase 3 (NAS3); CONTAINS InterPro DOMAIN/s: Nicotianamine synthase (InterPro:IPR004298); BEST Arabidopsis thaliana protein match is: nicotianamine synthase 4 (TAIR:AT1G56430.1); Has 198 Blast hits to 195 proteins in 46 species: Archae - 20; Bacteria - 10; Metazoa - 0; Fungi - 20; Plants - 147; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
2
at1g32350
alternative oxidase 1D - alternative oxidase 1D (AOX1D); FUNCTIONS IN: alternative oxidase activity; INVOLVED IN: oxidation reduction, response to cyclopentenone; LOCATED IN: mitochondrial envelope, mitochondrion; EXPRESSED IN: stem, sepal, leaf, stamen; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Alternative oxidase (InterPro:IPR002680); BEST Arabidopsis thaliana protein match is: alternative oxidase 1A (TAIR:AT3G22370.1); Has 1297 Blast hits to 1297 proteins in 245 species: Archae - 0; Bacteria - 109; Metazoa - 12; Fungi - 194; Plants - 377; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink).
3
at1g32940
Subtilase family protein - SBT3.5; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT1G32960.1); Has 6590 Blast hits to 6094 proteins in 1001 species: Archae - 208; Bacteria - 3597; Metazoa - 86; Fungi - 174; Plants - 1956; Viruses - 0; Other Eukaryotes - 569 (source: NCBI BLink).
4
at1g68620
alpha/beta-Hydrolases superfamily protein - alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: carboxyesterase 17 (TAIR:AT5G16080.1); Has 11100 Blast hits to 11083 proteins in 1670 species: Archae - 110; Bacteria - 6437; Metazoa - 919; Fungi - 1098; Plants - 1346; Viruses - 3; Other Eukaryotes - 1187 (source: NCBI BLink).
5
at2g29350
senescence-associated gene 13 senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase senescence-associated gene 13 (SAG13); CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29290.2); Has 124599 Blast hits to 124224 proteins in 3643 species: Archae - 998; Bacteria - 81817; Metazoa - 5872; Fungi - 6443; Plants - 2971; Viruses - 5; Other Eukaryotes - 26493 (source: NCBI BLink).
6
at2g43570
chitinase, putative - "chitinase, putative" (CHI); FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2763 Blast hits to 2517 proteins in 507 species: Archae - 0; Bacteria - 569; Metazoa - 35; Fungi - 239; Plants - 1787; Viruses - 9; Other Eukaryotes - 124 (source: NCBI BLink).
7
at2g45570
cytochrome P450, family 76, subfamily C, polypeptide 2 member of CYP76C "cytochrome P450, family 76, subfamily C, polypeptide 2" (CYP76C2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: stem, sepal, male gametophyte, carpel, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 76, subfamily C, polypeptide 4 (TAIR:AT2G45550.1); Has 34313 Blast hits to 34043 proteins in 1718 species: Archae - 48; Bacteria - 4021; Metazoa - 12101; Fungi - 7308; Plants - 9587; Viruses - 3; Other Eukaryotes - 1245 (source: NCBI BLink).
8
at4g04500
cysteine-rich RLK (RECEPTOR-like protein kinase) 37 Encodes a cysteine-rich receptor-like protein kinase. cysteine-rich RLK (RECEPTOR-like protein kinase) 37 (CRK37); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 39 (TAIR:AT4G04540.1); Has 124275 Blast hits to 122767 proteins in 4611 species: Archae - 108; Bacteria - 13946; Metazoa - 45736; Fungi - 10814; Plants - 34713; Viruses - 456; Other Eukaryotes - 18502 (source: NCBI BLink).
9
at5g11210
glutamate receptor 2.5 member of Putative ligand-gated ion channel subunit family glutamate receptor 2.5 (GLR2.5); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), GPCR, family 3 (InterPro:IPR000337), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 2.6 (TAIR:AT5G11180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

Creative Commons License
RIKEN Center for Sustainable Resource Science
Integrated Genome Informatics Research Unit