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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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AGI locus IDs

Choosing cell X:" 11 " Y:" 10 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adp005085 LinkIcon Positive ATH08p02705 LinkIcon - -
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ATH08p03186 LinkIcon - -
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ATH08p03190 LinkIcon - -
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ATH09p02719 LinkIcon - -
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ATH10p03387 LinkIcon - -
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ATH11p02711 LinkIcon - -
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ATH12p02417 LinkIcon - -
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ATH12p03453 LinkIcon - -
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ATH12p03456 LinkIcon - -
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ATH14p02453 LinkIcon - -
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ATH14p03243 LinkIcon - -
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ATH14p03501 LinkIcon - -
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ATH56p03600 LinkIcon - -
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ATH57p03285 LinkIcon - -
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ATH57p03752 LinkIcon - -
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ATH58p02492 LinkIcon - -
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ATH58p03291 LinkIcon - -
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ATH59p03024 LinkIcon - -
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ATH59p03769 LinkIcon - -
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ATH61p04089 LinkIcon - -
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ATH62p02780 LinkIcon - -
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ATH62p03271 LinkIcon - -
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ATH63p03767 LinkIcon - -
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ATH63p03768 LinkIcon - -
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ATH63p03802 LinkIcon - -
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ATH64p02483 LinkIcon - -
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ATH64p02755 LinkIcon - -
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ATH64p03290 LinkIcon - -
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ATH64p03294 LinkIcon - -
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2. Gene information

No. ID Short description Curator summary Computational description
1
at1g01740
Protein kinase protein with tetratricopeptide repeat domain - Protein kinase protein with tetratricopeptide repeat domain; FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: BR-signaling kinase 3 (TAIR:AT4G00710.1); Has 33834 Blast hits to 33303 proteins in 1392 species: Archae - 10; Bacteria - 2383; Metazoa - 7709; Fungi - 204; Plants - 21978; Viruses - 102; Other Eukaryotes - 1448 (source: NCBI BLink).
2
at1g08740
transposable element gene - similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G26530.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)
3
at1g20920
P-loop containing nucleoside triphosphate hydrolases superfamily protein - P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G09620.1); Has 370658 Blast hits to 166919 proteins in 4473 species: Archae - 2452; Bacteria - 63379; Metazoa - 145404; Fungi - 45975; Plants - 23206; Viruses - 1711; Other Eukaryotes - 88531 (source: NCBI BLink).
4
at1g21020
transposable element gene - similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G08740.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G26530.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1)
5
at1g31910
GHMP kinase family protein - GHMP kinase family protein; FUNCTIONS IN: kinase activity, ATP binding; INVOLVED IN: phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphomevalonate kinase, eukaryotic (InterPro:IPR005916), Phosphomevalonate kinase, ERG8 (InterPro:IPR016005), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); Has 314 Blast hits to 303 proteins in 161 species: Archae - 24; Bacteria - 53; Metazoa - 0; Fungi - 150; Plants - 51; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
6
at1g54370
sodium hydrogen exchanger 5 - sodium hydrogen exchanger 5 (NHX5); FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: lithium ion transport, sodium ion transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Na+/H+ exchanger, isoform 5/6/8, conserved region (InterPro:IPR018409), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: Na+/H+ antiporter 6 (TAIR:AT1G79610.1); Has 6647 Blast hits to 6641 proteins in 1771 species: Archae - 114; Bacteria - 4554; Metazoa - 890; Fungi - 160; Plants - 421; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).
7
at1g55970
histone acetyltransferase of the CBP family 4 HAC4 is most likely to be an expressed pseudogene that lacks HAT function. there is a single nucleotide deletion in both the HAC4 genomic and cDNA sequences relative to its homologs. The resulting frameshift within the open reading frame causes a stop codon to occur within the predicted acetyltransferase catalytic domain. histone acetyltransferase of the CBP family 4 (HAC4); FUNCTIONS IN: histone acetyltransferase activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, TAZ-type (InterPro:IPR000197), Histone H3-K56 acetyltransferase, RTT109 (InterPro:IPR013178), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, ZZ-type (InterPro:IPR000433), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 5 (TAIR:AT3G12980.1); Has 778 Blast hits to 575 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 394; Fungi - 19; Plants - 254; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
8
at1g63700
Protein kinase superfamily protein Member of MEKK subfamily, a component of the stomatal development regulatory pathway. Mutations in this locus result in embryo lethality. YODA (YDA); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: stomatal complex morphogenesis, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 3 (TAIR:AT1G53570.1); Has 133707 Blast hits to 131404 proteins in 4998 species: Archae - 148; Bacteria - 15191; Metazoa - 50613; Fungi - 12908; Plants - 32496; Viruses - 572; Other Eukaryotes - 21779 (source: NCBI BLink).
9
at1g69670
cullin 3B cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification. cullin 3B (CUL3B); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 3 (TAIR:AT1G26830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
10
at2g02210
transposable element gene - pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At1g32840, At4g04010, At2g06430, At2g15140, At2g04980, At2g14130, At3g44500, At2g15190, At3g47260, At5g34900, At3g29210, At3g32900
11
at2g06430
transposable element gene - pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At1g32840, At4g04010, At2g15140, At2g04980, At2g14130, At3g44500, At2g15190, At3g47260, At5g34900, At3g29210, At2g02210, At3g32900
12
at2g29240
transposable element gene - similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G08740.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G26530.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)
13
at2g31290
Ubiquitin carboxyl-terminal hydrolase family protein - Ubiquitin carboxyl-terminal hydrolase family protein; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT3G63090.1); Has 410 Blast hits to 406 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 408; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
14
at2g39840
type one serine/threonine protein phosphatase 4 Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. type one serine/threonine protein phosphatase 4 (TOPP4); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 2 (TAIR:AT5G59160.3); Has 7176 Blast hits to 6978 proteins in 618 species: Archae - 78; Bacteria - 533; Metazoa - 2415; Fungi - 1410; Plants - 987; Viruses - 16; Other Eukaryotes - 1737 (source: NCBI BLink).
15
at3g16230
Predicted eukaryotic LigT - Predicted eukaryotic LigT; FUNCTIONS IN: RNA binding, catalytic activity; INVOLVED IN: RNA metabolic process, regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088), Predicted eukaryotic LigT (InterPro:IPR009210), RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16220.1); Has 263 Blast hits to 258 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 179; Fungi - 13; Plants - 46; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
16
at3g17750
Protein kinase superfamily protein - Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G73460.1); Has 90043 Blast hits to 88641 proteins in 3072 species: Archae - 93; Bacteria - 10357; Metazoa - 34146; Fungi - 11944; Plants - 15915; Viruses - 393; Other Eukaryotes - 17195 (source: NCBI BLink).
17
at3g26530
transposable element gene - similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G08740.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)
18
at3g44500
transposable element gene - similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04010.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)
19
at3g47390
cytidine/deoxycytidylate deaminase family protein Encodes a protein that is believed to function as a pyrimidine reductase involved in riboflavin and FAD biosynthesis. phs1 was identified as a photosensitive mutant that shows reduced growth, chloroplast developmental abnormalities, reduced chlorophyll levels, increased oxidative stress, reduced NADPH/NADP+ ratios, reduced photosystem I electron transport, and reduced photosynthetic protein levels under high light conditions. Many of these abnormal phenotypes likely arise from the reduction in the levels of FAD in the phs1 mutant. PHOTOSENSITIVE 1 (PHS1); CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02464 (InterPro:IPR012816), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Riboflavin-specific deaminase, C-terminal (InterPro:IPR011549), Bacterial bifunctional deaminase-reductase, C-terminal (InterPro:IPR002734), Riboflavin biosynthesis protein RibD (InterPro:IPR004794); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G20960.1); Has 7611 Blast hits to 7611 proteins in 2242 species: Archae - 202; Bacteria - 4931; Metazoa - 21; Fungi - 157; Plants - 91; Viruses - 17; Other Eukaryotes - 2192 (source: NCBI BLink).
20
at3g53030
ser/arg-rich protein kinase 4 Encodes a protein kinase SRPK4 that specifically targets Arabidopsis Ser/Arg-rich (SR) slicing factors involved in RNA metabolism. In vitro kinase assay showed that SRPK4 phosphorylates the SR protein RSp31. ser/arg-rich protein kinase 4 (SRPK4); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: response to oxidative stress, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G44850.1); Has 38460 Blast hits to 29477 proteins in 1034 species: Archae - 2; Bacteria - 1392; Metazoa - 15648; Fungi - 7270; Plants - 6510; Viruses - 16; Other Eukaryotes - 7622 (source: NCBI BLink).
21
at4g00520
Acyl-CoA thioesterase family protein - Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 3429 Blast hits to 3402 proteins in 976 species: Archae - 0; Bacteria - 1910; Metazoa - 393; Fungi - 300; Plants - 65; Viruses - 0; Other Eukaryotes - 761 (source: NCBI BLink).
22
at4g00630
K+ efflux antiporter 2 member of Putative potassium transporter family K+ efflux antiporter 2 (KEA2); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153), K+/H+ exchanger (InterPro:IPR004771), NAD(P)-binding domain (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 1 (TAIR:AT1G01790.1); Has 34304 Blast hits to 27699 proteins in 2887 species: Archae - 928; Bacteria - 15112; Metazoa - 9897; Fungi - 1524; Plants - 1371; Viruses - 95; Other Eukaryotes - 5377 (source: NCBI BLink).
23
at4g04010
transposable element gene - similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G44500.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)
24
at4g09560
Protease-associated (PA) RING/U-box zinc finger family protein - Protease-associated (PA) RING/U-box zinc finger family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 8638 Blast hits to 8590 proteins in 307 species: Archae - 0; Bacteria - 82; Metazoa - 2131; Fungi - 686; Plants - 4708; Viruses - 16; Other Eukaryotes - 1015 (source: NCBI BLink).
25
at4g10730
Protein kinase superfamily protein - Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: stem, cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G24100.1); Has 123193 Blast hits to 121433 proteins in 3863 species: Archae - 107; Bacteria - 14168; Metazoa - 45829; Fungi - 11619; Plants - 30923; Viruses - 608; Other Eukaryotes - 19939 (source: NCBI BLink).
26
at4g10940
RING/U-box protein - RING/U-box protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: stem, embryo, flower, seed; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/U-box protein (TAIR:AT3G05670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
27
at5g01270
carboxyl-terminal domain (ctd) phosphatase-like 2 Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. carboxyl-terminal domain (ctd) phosphatase-like 2 (CPL2); FUNCTIONS IN: double-stranded RNA binding, phosphatase activity; INVOLVED IN: response to auxin stimulus, response to osmotic stress, developmental growth; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: C-terminal domain phosphatase-like 1 (TAIR:AT4G21670.1); Has 234 Blast hits to 223 proteins in 82 species: Archae - 0; Bacteria - 8; Metazoa - 40; Fungi - 61; Plants - 110; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
28
at5g34900
transposable element gene - similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04010.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)
29
at5g37380
Chaperone DnaJ-domain superfamily protein - Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G53150.1); Has 20231 Blast hits to 19941 proteins in 3237 species: Archae - 147; Bacteria - 8602; Metazoa - 3333; Fungi - 1703; Plants - 2044; Viruses - 29; Other Eukaryotes - 4373 (source: NCBI BLink).
30
at5g44890
transposable element gene - similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G08740.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G26530.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)
31
at5g44930
Exostosin family protein Encodes a putative arabinosyltransferase. ARABINAN DEFICIENT 2 (ARAD2); FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT2G35100.1); Has 1289 Blast hits to 1285 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 4; Plants - 990; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
32
at5g57140
purple acid phosphatase 28 - purple acid phosphatase 28 (PAP28); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Phosphoesterase At2g46880 (InterPro:IPR011230); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 29 (TAIR:AT5G63140.1); Has 678 Blast hits to 661 proteins in 227 species: Archae - 0; Bacteria - 324; Metazoa - 0; Fungi - 205; Plants - 115; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).

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RIKEN Center for Sustainable Resource Science
Integrated Genome Informatics Research Unit