Home Gene search Metabolite search PRIMe
 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
 Highlight filters
Keyword
AGI locus IDs

Choosing cell X:" 12 " Y:" 10 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adp012790 LinkIcon Positive ATH09p06127 LinkIcon PT104690 LinkIcon 0.994
3-cyanopyridine; MS2; Q-Tof; [M+H]+
   3-cyanopyridine
  3-Pyridinecarbonitrile
  Nicotinic acid nitrile
  Nicotinonitrile
  Pyridine-3-carbonitrile
  beta-Pyridyl Cyanide
  3-Azabenzonitrile
  3-Pyridinecarbonitrile
  pyridine-3-carbonitrile
  1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
PT111210 LinkIcon 0.989
Lignoceric acid ; MS2; Q-Tof; [M+H]+
   Lignoceric acid
  Carboxylic Acid C24
  Tetracosaoic acid
  tetracosanoic acid
PS118104 LinkIcon 0.988
1-O-b-D-glucopyranosyl sinapate; MS2; QqQ; positive; CE 40 V
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
PS046902 LinkIcon 0.985
3-cyanopyridine; MS2; QqQ; positive; CE 20 V
   3-cyanopyridine
  3-Pyridinecarbonitrile
  Nicotinic acid nitrile
  Nicotinonitrile
  Pyridine-3-carbonitrile
  beta-Pyridyl Cyanide
  3-Azabenzonitrile
  3-Pyridinecarbonitrile
PS095302 LinkIcon 0.966
Hippuric Acid; MS2; QqQ; positive; CE 20 V
   Hippuric Acid
  Hippurate
  N-Benzoylglycine
  N-Benzoylglycine
  Benzoylaminoacetic acid
  Benzamidoacetic acid
  Phenylcarbonylaminoacetic acid
ATH06p06496 LinkIcon PT112530 LinkIcon 0.961
Calciferol; MS2; Q-Tof; [M+H]+
   Calciferol
  Vitamin D2
  Ergocalciferol
  Viosterin
  Osteil
  Viosterol
  Ercalciol
  Irradiated ergosterol
  Condacaps
  Condocaps
  Condol
  Crtron
  Crystallina
  Daral
  (5Z,7E,22E)-(3S)-9,10-Secoergosta-5,7,10(19),22-tetraen-3-ol
  Davitin
  Deltalin
  Deratol
  Diactol
  Drisdol
  Ergorone
  Ertron
  Fortodyl
  Geltabs
  Hyperkil
  Irradiated ergosta-5,7,22-trien-3-beta-ol
  Metadee
ATH09p06127 LinkIcon PT111810 LinkIcon 0.961
1-O-b-D-glucopyranosyl sinapate; MS2; Q-Tof; [M+H]+
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
  [(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] (E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate
ATH06p06496 LinkIcon PT112580 LinkIcon 0.953
delta-Tocotrienol; MS2; Q-Tof; [M+H]+
   delta-Tocotrienol
  8-Methyltocotrienol
  (R)-delta-Tocotrienol
  (2R)-2,8-dimethyl-2-[(3E,7E)-4,8,12-trimethyltrideca-3,7,11-trienyl]chroman-6-ol
ATH06p06165 LinkIcon PT111810 LinkIcon 0.951
1-O-b-D-glucopyranosyl sinapate; MS2; Q-Tof; [M+H]+
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
  [(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] (E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate
ATH63p08121 LinkIcon PT101453 LinkIcon 0.948
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH09p06127 LinkIcon PS118106 LinkIcon 0.944
1-O-b-D-glucopyranosyl sinapate; MS2; QqQ; positive; CE 60 V
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
ATH06p06165 LinkIcon PS118102 LinkIcon 0.943
1-O-b-D-glucopyranosyl sinapate; MS2; QqQ; positive; CE 20 V
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
  3-cyanopyridine
  3-Pyridinecarbonitrile
  Nicotinic acid nitrile
  Nicotinonitrile
  Pyridine-3-carbonitrile
  beta-Pyridyl Cyanide
  3-Azabenzonitrile
  3-Pyridinecarbonitrile
  pyridine-3-carbonitrile
ATH63p07327 LinkIcon PT101453 LinkIcon 0.942
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH64p07997 LinkIcon PT101453 LinkIcon 0.941
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH63p06026 LinkIcon PM018094 LinkIcon 0.940
Sinapoylcholine dimer-isomer; MS2; Q-TOF; M+H; 15->55V
   Sinapoylcholine dimer-isomer
ATH06p06165 LinkIcon PT111210 LinkIcon 0.938
Lignoceric acid ; MS2; Q-Tof; [M+H]+
   Lignoceric acid
  Carboxylic Acid C24
  Tetracosaoic acid
  tetracosanoic acid
ATH63p06026 LinkIcon PM018093 LinkIcon 0.938
Sinapoylcholine dimer-isomer; MS2; Q-TOF; M+H; 15->55V
   Sinapoylcholine dimer-isomer
ATH06p06165 LinkIcon PS118104 LinkIcon 0.937
1-O-b-D-glucopyranosyl sinapate; MS2; QqQ; positive; CE 40 V
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
ATH14p06916 LinkIcon PT111810 LinkIcon 0.937
1-O-b-D-glucopyranosyl sinapate; MS2; Q-Tof; [M+H]+
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
  [(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] (E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate
ATH09p06127 LinkIcon PT104693 LinkIcon 0.936
3-cyanopyridine; MS2; Q-Tof; [M+H]+
   3-cyanopyridine
  3-Pyridinecarbonitrile
  Nicotinic acid nitrile
  Nicotinonitrile
  Pyridine-3-carbonitrile
  beta-Pyridyl Cyanide
  3-Azabenzonitrile
  3-Pyridinecarbonitrile
  pyridine-3-carbonitrile
PS095303 LinkIcon 0.935
Hippuric Acid; MS2; QqQ; positive; CE 30 V
   Hippuric Acid
  Hippurate
  N-Benzoylglycine
  N-Benzoylglycine
  Benzoylaminoacetic acid
  Benzamidoacetic acid
  Phenylcarbonylaminoacetic acid
ATH06p06165 LinkIcon PS046902 LinkIcon 0.934
3-cyanopyridine; MS2; QqQ; positive; CE 20 V
   3-cyanopyridine
  3-Pyridinecarbonitrile
  Nicotinic acid nitrile
  Nicotinonitrile
  Pyridine-3-carbonitrile
  beta-Pyridyl Cyanide
  3-Azabenzonitrile
  3-Pyridinecarbonitrile
ATH07p05943 LinkIcon PT101453 LinkIcon 0.934
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH64p07997 LinkIcon PT111810 LinkIcon 0.934
1-O-b-D-glucopyranosyl sinapate; MS2; Q-Tof; [M+H]+
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
  [(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] (E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate
ATH13p07833 LinkIcon PT101453 LinkIcon 0.928
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH63p06026 LinkIcon PM018092 LinkIcon 0.925
Sinapoylcholine dimer-isomer; MS2; Q-TOF; M+H; 15->55V
   Sinapoylcholine dimer-isomer
ATH63p07330 LinkIcon PT101453 LinkIcon 0.924
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH14p06916 LinkIcon PT101453 LinkIcon 0.923
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH64p08485 LinkIcon PT101453 LinkIcon 0.921
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH14p06916 LinkIcon PS118102 LinkIcon 0.919
1-O-b-D-glucopyranosyl sinapate; MS2; QqQ; positive; CE 20 V
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
  3-cyanopyridine
  3-Pyridinecarbonitrile
  Nicotinic acid nitrile
  Nicotinonitrile
  Pyridine-3-carbonitrile
  beta-Pyridyl Cyanide
  3-Azabenzonitrile
  3-Pyridinecarbonitrile
  pyridine-3-carbonitrile
ATH64p07237 LinkIcon PT101453 LinkIcon 0.918
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH06p06165 LinkIcon PS095302 LinkIcon 0.917
Hippuric Acid; MS2; QqQ; positive; CE 20 V
   Hippuric Acid
  Hippurate
  N-Benzoylglycine
  N-Benzoylglycine
  Benzoylaminoacetic acid
  Benzamidoacetic acid
  Phenylcarbonylaminoacetic acid
ATH13p06877 LinkIcon PT101453 LinkIcon 0.915
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH64p07997 LinkIcon PS118102 LinkIcon 0.915
1-O-b-D-glucopyranosyl sinapate; MS2; QqQ; positive; CE 20 V
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
  3-cyanopyridine
  3-Pyridinecarbonitrile
  Nicotinic acid nitrile
  Nicotinonitrile
  Pyridine-3-carbonitrile
  beta-Pyridyl Cyanide
  3-Azabenzonitrile
  3-Pyridinecarbonitrile
  pyridine-3-carbonitrile
  Lignoceric acid
  Carboxylic Acid C24
  Tetracosaoic acid
  tetracos
ATH13p07833 LinkIcon PT111810 LinkIcon 0.914
1-O-b-D-glucopyranosyl sinapate; MS2; Q-Tof; [M+H]+
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
  [(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] (E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate
ATH14p06916 LinkIcon PT111210 LinkIcon 0.914
Lignoceric acid ; MS2; Q-Tof; [M+H]+
   Lignoceric acid
  Carboxylic Acid C24
  Tetracosaoic acid
  tetracosanoic acid
ATH10p06119 LinkIcon PT101453 LinkIcon 0.913
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH14p06916 LinkIcon PS118104 LinkIcon 0.913
1-O-b-D-glucopyranosyl sinapate; MS2; QqQ; positive; CE 40 V
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
ATH63p08118 LinkIcon PT101453 LinkIcon 0.912
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH14p06916 LinkIcon PS046902 LinkIcon 0.911
3-cyanopyridine; MS2; QqQ; positive; CE 20 V
   3-cyanopyridine
  3-Pyridinecarbonitrile
  Nicotinic acid nitrile
  Nicotinonitrile
  Pyridine-3-carbonitrile
  beta-Pyridyl Cyanide
  3-Azabenzonitrile
  3-Pyridinecarbonitrile
ATH63p08121 LinkIcon PT111810 LinkIcon 0.911
1-O-b-D-glucopyranosyl sinapate; MS2; Q-Tof; [M+H]+
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
  [(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] (E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate
ATH64p07997 LinkIcon PS118104 LinkIcon 0.910
1-O-b-D-glucopyranosyl sinapate; MS2; QqQ; positive; CE 40 V
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
ATH10p06119 LinkIcon PT111810 LinkIcon 0.909
1-O-b-D-glucopyranosyl sinapate; MS2; Q-Tof; [M+H]+
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
  [(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] (E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate
ATH63p07327 LinkIcon PT111810 LinkIcon 0.908
1-O-b-D-glucopyranosyl sinapate; MS2; Q-Tof; [M+H]+
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
  [(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] (E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate
ATH64p07997 LinkIcon PS046902 LinkIcon 0.907
3-cyanopyridine; MS2; QqQ; positive; CE 20 V
   3-cyanopyridine
  3-Pyridinecarbonitrile
  Nicotinic acid nitrile
  Nicotinonitrile
  Pyridine-3-carbonitrile
  beta-Pyridyl Cyanide
  3-Azabenzonitrile
  3-Pyridinecarbonitrile
ATH11p06203 LinkIcon PT101453 LinkIcon 0.905
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH14p06583 LinkIcon PT101453 LinkIcon 0.904
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH61p07530 LinkIcon PT101453 LinkIcon 0.902
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH06p06165 LinkIcon PT101453 LinkIcon 0.900
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH12p05771 LinkIcon PT101453 LinkIcon 0.900
2'-Deoxycytidine-5'-diphosphate sodium salt; MS2; Q-Tof; [M+H]+
   2'-Deoxycytidine-5'-diphosphate sodium salt
ATH63p08118 LinkIcon PT111810 LinkIcon 0.900
1-O-b-D-glucopyranosyl sinapate; MS2; Q-Tof; [M+H]+
   1-O-b-D-glucopyranosyl sinapate
  1-O-Sinapoyl-beta-D-glucose
  1-O-Sinapoyl beta-D-glucoside
  [(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] (E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate
ATH06p05937 LinkIcon - -
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ATH06p06493 LinkIcon - -
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ATH07p06181 LinkIcon - -
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ATH07p06332 LinkIcon - -
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ATH08p06027 LinkIcon - -
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ATH08p06254 LinkIcon - -
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ATH08p06590 LinkIcon - -
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ATH08p06593 LinkIcon - -
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ATH09p06130 LinkIcon - -
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ATH09p06373 LinkIcon - -
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ATH09p06376 LinkIcon - -
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ATH10p05680 LinkIcon - -
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ATH10p05683 LinkIcon - -
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ATH11p05990 LinkIcon - -
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ATH11p06534 LinkIcon - -
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ATH11p06537 LinkIcon - -
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ATH12p05774 LinkIcon - -
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ATH12p06259 LinkIcon - -
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ATH12p06262 LinkIcon - -
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ATH13p07090 LinkIcon - -
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ATH14p07107 LinkIcon - -
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ATH14p07280 LinkIcon - -
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ATH56p05886 LinkIcon - -
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ATH56p05889 LinkIcon - -
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ATH56p06447 LinkIcon - -
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ATH56p06451 LinkIcon - -
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ATH57p05581 LinkIcon - -
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ATH57p05584 LinkIcon - -
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ATH57p05992 LinkIcon - -
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ATH57p05995 LinkIcon - -
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ATH58p06715 LinkIcon - -
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ATH58p06718 LinkIcon - -
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ATH58p07461 LinkIcon - -
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ATH58p07464 LinkIcon - -
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ATH59p05790 LinkIcon - -
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ATH59p05794 LinkIcon - -
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ATH59p06212 LinkIcon - -
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ATH59p06216 LinkIcon - -
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ATH61p07533 LinkIcon - -
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ATH61p08014 LinkIcon - -
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ATH61p08018 LinkIcon - -
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ATH62p05572 LinkIcon - -
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ATH62p05965 LinkIcon - -
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ATH62p05969 LinkIcon - -
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ATH63p06029 LinkIcon - -
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ATH63p06553 LinkIcon - -
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ATH63p06556 LinkIcon - -
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ATH64p07240 LinkIcon - -
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2. Gene information

No. ID Short description Curator summary Computational description
1
at1g03000
peroxin 6 Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis. May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import. peroxin 6 (PEX6); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 36036 Blast hits to 31766 proteins in 3165 species: Archae - 1626; Bacteria - 13920; Metazoa - 5344; Fungi - 4031; Plants - 3389; Viruses - 33; Other Eukaryotes - 7693 (source: NCBI BLink).
2
at1g59790
Cullin family protein - Cullin family protein; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cullin-RING ubiquitin ligase complex; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 1 (TAIR:AT4G02570.4); Has 1509 Blast hits to 1507 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 762; Fungi - 308; Plants - 286; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).
3
at1g60930
RECQ helicase L4B AtRECQ4B mutant showed no sensitivity to DNA damaging agents.Involved in homologous recombination. RECQ helicase L4B (RECQ4B); FUNCTIONS IN: in 8 functions; INVOLVED IN: DNA recombination; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RQC domain (InterPro:IPR018982), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), HRDC-like (InterPro:IPR010997), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: DNA helicase (RECQl4A) (TAIR:AT1G10930.1); Has 28171 Blast hits to 28052 proteins in 2731 species: Archae - 327; Bacteria - 17551; Metazoa - 2839; Fungi - 1949; Plants - 1368; Viruses - 5; Other Eukaryotes - 4132 (source: NCBI BLink).
4
at1g65170
Ubiquitin carboxyl-terminal hydrolase family protein - Ubiquitin carboxyl-terminal hydrolase family protein; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT1G65140.1); Has 172 Blast hits to 172 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
5
at2g02400
NAD(P)-binding Rossmann-fold superfamily protein - NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G58490.1); Has 17462 Blast hits to 17447 proteins in 2524 species: Archae - 423; Bacteria - 8786; Metazoa - 654; Fungi - 1071; Plants - 2738; Viruses - 70; Other Eukaryotes - 3720 (source: NCBI BLink).
6
at2g20110
Tesmin/TSO1-like CXC domain-containing protein - Tesmin/TSO1-like CXC domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT4G29000.1); Has 1013 Blast hits to 701 proteins in 101 species: Archae - 0; Bacteria - 4; Metazoa - 299; Fungi - 6; Plants - 316; Viruses - 1; Other Eukaryotes - 387 (source: NCBI BLink).
7
at3g28140
RNA ligase/cyclic nucleotide phosphodiesterase family protein - RNA ligase/cyclic nucleotide phosphodiesterase family protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: RNA metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097); BEST Arabidopsis thaliana protein match is: RNA ligase/cyclic nucleotide phosphodiesterase family protein (TAIR:AT5G40190.1); Has 114 Blast hits to 114 proteins in 51 species: Archae - 0; Bacteria - 72; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
8
at3g33520
actin-related protein 6 Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis. Along with PIE1 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6). Incorporation of this variant histone into chromatin mediates the ambient temperature response. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times. ARP6 also is involved in globally controlling developmental responses to ambient temperature. actin-related protein 6 (ARP6); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 12358 Blast hits to 12072 proteins in 2463 species: Archae - 0; Bacteria - 4; Metazoa - 5326; Fungi - 3155; Plants - 1501; Viruses - 2; Other Eukaryotes - 2370 (source: NCBI BLink).
9
at3g58560
DNAse I-like superfamily protein - DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT3G58580.1); Has 1372 Blast hits to 1328 proteins in 220 species: Archae - 0; Bacteria - 20; Metazoa - 540; Fungi - 247; Plants - 315; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink).
10
at3g62970
zinc finger (C3HC4-type RING finger) family protein - zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G18650.1); Has 819 Blast hits to 814 proteins in 181 species: Archae - 0; Bacteria - 4; Metazoa - 266; Fungi - 146; Plants - 268; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
11
at4g24860
P-loop containing nucleoside triphosphate hydrolases superfamily protein - P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, leaf whorl, sperm cell, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G62130.1); Has 36802 Blast hits to 34347 proteins in 3158 species: Archae - 1551; Bacteria - 15209; Metazoa - 4767; Fungi - 3515; Plants - 2998; Viruses - 28; Other Eukaryotes - 8734 (source: NCBI BLink).
12
at4g37330
cytochrome P450, family 81, subfamily D, polypeptide 4 member of CYP81D "cytochrome P450, family 81, subfamily D, polypeptide 4" (CYP81D4); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 81, subfamily D, polypeptide 5 (TAIR:AT4G37320.1); Has 36638 Blast hits to 36468 proteins in 1879 species: Archae - 61; Bacteria - 6348; Metazoa - 11702; Fungi - 7393; Plants - 9479; Viruses - 6; Other Eukaryotes - 1649 (source: NCBI BLink).
13
at5g22030
ubiquitin-specific protease 8 - ubiquitin-specific protease 8 (UBP8); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 5 (TAIR:AT2G40930.1); Has 10748 Blast hits to 7392 proteins in 262 species: Archae - 0; Bacteria - 6; Metazoa - 5718; Fungi - 1753; Plants - 1297; Viruses - 10; Other Eukaryotes - 1964 (source: NCBI BLink).
14
at5g41480
Folylpolyglutamate synthetase family protein Encodes a dihydrofolate synthetase based on yeast complementation experiments. This protein is involved in folate biosynthesis. GLOBULAR ARREST1 (GLA1); FUNCTIONS IN: dihydrofolate synthase activity; INVOLVED IN: one-carbon metabolic process, embryo development ending in seed dormancy; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mur ligase, central (InterPro:IPR013221), Folylpolyglutamate synthetase, conserved site (InterPro:IPR018109), Mur ligase, C-terminal (InterPro:IPR004101), Folylpolyglutamate synthetase (InterPro:IPR001645); BEST Arabidopsis thaliana protein match is: DHFS-FPGS homolog B (TAIR:AT5G05980.2); Has 8245 Blast hits to 8243 proteins in 2505 species: Archae - 47; Bacteria - 5105; Metazoa - 156; Fungi - 354; Plants - 131; Viruses - 0; Other Eukaryotes - 2452 (source: NCBI BLink).
15
at5g49060
Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) - FUNCTIONS IN: protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Protein of unknown function DUF1977, DnaJ-like (InterPro:IPR015399), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (TAIR:AT3G57340.2); Has 23804 Blast hits to 23788 proteins in 3287 species: Archae - 182; Bacteria - 9342; Metazoa - 4208; Fungi - 2292; Plants - 2452; Viruses - 18; Other Eukaryotes - 5310 (source: NCBI BLink).
16
at5g62610
basic helix-loop-helix (bHLH) DNA-binding superfamily protein - basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BIG PETAL P (TAIR:AT1G59640.1); Has 2341 Blast hits to 2333 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 49; Plants - 2274; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
17
at5g63670
SPT4 homolog 2 - SPT4 homolog 2 (SPT42); FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription, N-terminal protein myristoylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: Transcription initiation Spt4-like protein (TAIR:AT5G08565.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
18
at5g65940
beta-hydroxyisobutyryl-CoA hydrolase 1 hydrolyzes beta-hydroxyisobutyryl-CoA beta-hydroxyisobutyryl-CoA hydrolase 1 (CHY1); CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT2G30660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
19
at5g67580
Homeodomain-like/winged-helix DNA-binding family protein Encodes a telomeric DNA binding protein. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. TRB2; FUNCTIONS IN: single-stranded telomeric DNA binding, DNA binding, protein homodimerization activity, sequence-specific DNA binding transcription factor activity, double-stranded telomeric DNA binding; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Histone H1/H5 (InterPro:IPR005818), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: telomere repeat binding factor 3 (TAIR:AT3G49850.1); Has 792 Blast hits to 790 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 127; Fungi - 75; Plants - 516; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).

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Integrated Genome Informatics Research Unit