Home Gene search Metabolite search PRIMe
 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
 Highlight filters
Keyword
AGI locus IDs

Choosing cell X:" 13 " Y:" 18 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn011691 LinkIcon Negative ATH13n01503 LinkIcon PS001607 LinkIcon 0.989
(+-)-3-Methyl-2-oxovaleric acid sodium salt; MS2; QqQ; negative; CE 10 V
   (+-)-3-Methyl-2-oxovaleric acid sodium salt
PS075407 LinkIcon 0.926
Citraconic Acid; MS2; QqQ; negative; CE 10 V
   Citraconic Acid
  Citraconate
  Mesaconic Acid
  2-Methylmaleate
  Methylmaleic acid
  2-Methyl-2-butenedioic acid
  cis-Methylbutenedioic acid
ATH06n01192 LinkIcon PM000999 LinkIcon 0.903
N-acetyl-L-lysine; MS2; QqQ; M-H; -16
   N-acetyl-L-lysine
ATH58n01483 LinkIcon PS098909 LinkIcon 0.903
DL-4-Hydroxy-3-methoxymandelic acid ; MS2; QqQ; negative; CE 30 V
   DL-4-Hydroxy-3-methoxymandelic acid
  VMA
  4-Hydroxy-3-methoxymandelate
  Vanillylmandelic acid
  Vanillomandelic acid
  Vanilmandelic acid
  Vanilinmandelic Acid
  alpha,4-Dihydroxy-3-methoxybenzeneacetic acid
ATH58n02796 LinkIcon - -
-
2 adn034145 LinkIcon Negative ATH08n07913 LinkIcon - -
-
ATH10n05462 LinkIcon - -
-
ATH59n08976 LinkIcon - -
-
ATH61n08126 LinkIcon - -
-
3 adn040083 LinkIcon Negative ATH12n04459 LinkIcon PM018008 LinkIcon 0.972
4-Methylsulfinyl-n-butyl glucosinolate; MS2; Q-TOF; M-H; 15->55V
   4-Methylsulfinyl-n-butyl glucosinolate
  glucoraphanin
ATH11n04829 LinkIcon PM018008 LinkIcon 0.958
4-Methylsulfinyl-n-butyl glucosinolate; MS2; Q-TOF; M-H; 15->55V
   4-Methylsulfinyl-n-butyl glucosinolate
  glucoraphanin
ATH11n05665 LinkIcon PM018008 LinkIcon 0.954
4-Methylsulfinyl-n-butyl glucosinolate; MS2; Q-TOF; M-H; 15->55V
   4-Methylsulfinyl-n-butyl glucosinolate
  glucoraphanin
ATH08n09570 LinkIcon PM018008 LinkIcon 0.952
4-Methylsulfinyl-n-butyl glucosinolate; MS2; Q-TOF; M-H; 15->55V
   4-Methylsulfinyl-n-butyl glucosinolate
  glucoraphanin
ATH61n09488 LinkIcon PM018008 LinkIcon 0.945
4-Methylsulfinyl-n-butyl glucosinolate; MS2; Q-TOF; M-H; 15->55V
   4-Methylsulfinyl-n-butyl glucosinolate
  glucoraphanin
ATH56n10577 LinkIcon PS058507 LinkIcon 0.944
D-Gluconic acid sodium salt; MS2; QqQ; negative; CE 10 V
   D-Gluconic acid sodium salt
  Sodium D-gluconate
  Glonsen
  Glucose Acid
  D-Gluco-hexonic acid
  2,3,4,5,6-Pentahydroxycaproic acid
PS102908 LinkIcon 0.941
1,3-Dimethylurate; MS2; QqQ; negative; CE 20 V
   1,3-Dimethylurate
  1,3-Dimethyluric acid
  1,3-Dimethyl-2,6,8-trihydroxypurine
  Oxytheophylline
ATH61n08821 LinkIcon PM018008 LinkIcon 0.931
4-Methylsulfinyl-n-butyl glucosinolate; MS2; Q-TOF; M-H; 15->55V
   4-Methylsulfinyl-n-butyl glucosinolate
  glucoraphanin
ATH61n08825 LinkIcon PM018008 LinkIcon 0.931
4-Methylsulfinyl-n-butyl glucosinolate; MS2; Q-TOF; M-H; 15->55V
   4-Methylsulfinyl-n-butyl glucosinolate
  glucoraphanin
ATH61n09740 LinkIcon PM018008 LinkIcon 0.931
4-Methylsulfinyl-n-butyl glucosinolate; MS2; Q-TOF; M-H; 15->55V
   4-Methylsulfinyl-n-butyl glucosinolate
  glucoraphanin
ATH62n10048 LinkIcon PM018008 LinkIcon 0.929
4-Methylsulfinyl-n-butyl glucosinolate; MS2; Q-TOF; M-H; 15->55V
   4-Methylsulfinyl-n-butyl glucosinolate
  glucoraphanin
ATH12n04936 LinkIcon PM018008 LinkIcon 0.925
4-Methylsulfinyl-n-butyl glucosinolate; MS2; Q-TOF; M-H; 15->55V
   4-Methylsulfinyl-n-butyl glucosinolate
  glucoraphanin
ATH62n09171 LinkIcon PM018008 LinkIcon 0.923
4-Methylsulfinyl-n-butyl glucosinolate; MS2; Q-TOF; M-H; 15->55V
   4-Methylsulfinyl-n-butyl glucosinolate
  glucoraphanin
ATH57n10468 LinkIcon PM018008 LinkIcon 0.921
4-Methylsulfinyl-n-butyl glucosinolate; MS2; Q-TOF; M-H; 15->55V
   4-Methylsulfinyl-n-butyl glucosinolate
  glucoraphanin
ATH57n09761 LinkIcon PM018008 LinkIcon 0.910
4-Methylsulfinyl-n-butyl glucosinolate; MS2; Q-TOF; M-H; 15->55V
   4-Methylsulfinyl-n-butyl glucosinolate
  glucoraphanin
ATH12n04936 LinkIcon PS107507 LinkIcon 0.902
4-(Methylsulfinyl)butylglucosinolate; MS2; QqQ; negative; CE 10 V
   4-(Methylsulfinyl)butylglucosinolate
  4MSOB
  glucoraphanin
  4-methylsulfinylbutyl glucosinolate
ATH07n05907 LinkIcon - -
-
ATH07n06586 LinkIcon - -
-
ATH08n08800 LinkIcon - -
-
ATH09n08623 LinkIcon - -
-
ATH09n09236 LinkIcon - -
-
ATH10n06626 LinkIcon - -
-
ATH14n08295 LinkIcon - -
-
ATH56n10086 LinkIcon - -
-
ATH57n09765 LinkIcon - -
-
ATH57n10471 LinkIcon - -
-
ATH58n10472 LinkIcon - -
-
ATH58n10978 LinkIcon - -
-
ATH58n10981 LinkIcon - -
-
ATH59n09718 LinkIcon - -
-
ATH59n10908 LinkIcon - -
-
ATH60n10290 LinkIcon - -
-
ATH62n10051 LinkIcon - -
-
4 adn070792 LinkIcon Negative ATH06n10593 LinkIcon - -
-
ATH06n11029 LinkIcon - -
-
ATH07n12364 LinkIcon - -
-
ATH08n13926 LinkIcon - -
-
ATH08n14280 LinkIcon - -
-
ATH09n14159 LinkIcon - -
-
ATH10n11183 LinkIcon - -
-
ATH10n11187 LinkIcon - -
-
ATH13n13883 LinkIcon - -
-
ATH59n16585 LinkIcon - -
-
ATH59n16840 LinkIcon - -
-
ATH60n16290 LinkIcon - -
-
ATH61n15934 LinkIcon - -
-
ATH62n15515 LinkIcon - -
-
ATH62n15980 LinkIcon - -
-
ATH63n16531 LinkIcon - -
-
ATH64n15452 LinkIcon - -
-
5 adn107053 LinkIcon Negative ATH63n18399 LinkIcon - -
-
ATH63n18401 LinkIcon - -
-
6 adn144102 LinkIcon Negative - - -
-
7 adn149571 LinkIcon Negative ATH62n19334 LinkIcon - -
-
ATH64n19043 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g56430
nicotianamine synthase 4 Encodes a protein with nicotianamine synthase activity. nicotianamine synthase 4 (NAS4); CONTAINS InterPro DOMAIN/s: Nicotianamine synthase (InterPro:IPR004298); BEST Arabidopsis thaliana protein match is: nicotianamine synthase 3 (TAIR:AT1G09240.1); Has 205 Blast hits to 202 proteins in 47 species: Archae - 24; Bacteria - 12; Metazoa - 0; Fungi - 20; Plants - 147; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
2
at3g46490
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction, secondary metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G35190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
3
at3g52720
alpha carbonic anhydrase 1 Encodes a putative alpha carbonic anhydrase (CAH1) located in the chloroplast stroma. Most chloroplast proteins are encoded by the nuclear genome and imported with the help of sorting signals that are intrinsic parts of the polypeptides. CAH1 takes an alternative route through the secretory pathway, and becomes N-glycosylated before entering the chloroplast. alpha carbonic anhydrase 1 (ACA1); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: one-carbon metabolic process; LOCATED IN: chloroplast stroma; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340), Carbonic anhydrase, alpha-class, conserved site (InterPro:IPR018338); BEST Arabidopsis thaliana protein match is: alpha carbonic anhydrase 7 (TAIR:AT1G08080.1); Has 3348 Blast hits to 3336 proteins in 547 species: Archae - 0; Bacteria - 715; Metazoa - 2044; Fungi - 83; Plants - 327; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).

Creative Commons License
RIKEN Center for Sustainable Resource Science
Integrated Genome Informatics Research Unit