Home Gene search Metabolite search PRIMe
 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
 Highlight filters
Keyword
AGI locus IDs

Choosing cell X:" 13 " Y:" 25 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn044014 LinkIcon Negative ATH06n06056 LinkIcon PM018051 LinkIcon 1.000
Quercetin-3-Arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Quercetin-3-Arabinoside-7-rhamnoside
ATH08n09200 LinkIcon PM018051 LinkIcon 0.999
Quercetin-3-Arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Quercetin-3-Arabinoside-7-rhamnoside
ATH11n05397 LinkIcon PS045607 LinkIcon 0.986
(+)-Epicatechin; MS2; QqQ; negative; CE 10 V
   (+)-Epicatechin
  EpCt-pl
  ent-Epicatechin
  Epicatechol
  (+)-3,3',4',5,7-Pentahydroxyflavan
ATH13n09038 LinkIcon PM018051 LinkIcon 0.985
Quercetin-3-Arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Quercetin-3-Arabinoside-7-rhamnoside
ATH06n06773 LinkIcon PM018051 LinkIcon 0.984
Quercetin-3-Arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Quercetin-3-Arabinoside-7-rhamnoside
ATH11n05845 LinkIcon PS045607 LinkIcon 0.976
(+)-Epicatechin; MS2; QqQ; negative; CE 10 V
   (+)-Epicatechin
  EpCt-pl
  ent-Epicatechin
  Epicatechol
  (+)-3,3',4',5,7-Pentahydroxyflavan
ATH11n05397 LinkIcon PS045507 LinkIcon 0.974
(+)-Catechin hydrate; MS2; QqQ; negative; CE 10 V
   (+)-Catechin hydrate
  Ct
  Cyanidanol
  Cianidanol
  Catechuic Acid
  Catechinic acid
  catechol
  trans-3,3',4',5,7-Pentahydroxyflavane
  3,3',4',5,7-Flavanpentol
  (2R,3S)-(+)-Catechin
  2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-1-Benzopyran-3,5,7-triol
ATH08n10026 LinkIcon PM018051 LinkIcon 0.967
Quercetin-3-Arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Quercetin-3-Arabinoside-7-rhamnoside
ATH11n05845 LinkIcon PS045507 LinkIcon 0.964
(+)-Catechin hydrate; MS2; QqQ; negative; CE 10 V
   (+)-Catechin hydrate
  Ct
  Cyanidanol
  Cianidanol
  Catechuic Acid
  Catechinic acid
  catechol
  trans-3,3',4',5,7-Pentahydroxyflavane
  3,3',4',5,7-Flavanpentol
  (2R,3S)-(+)-Catechin
  2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-1-Benzopyran-3,5,7-triol
ATH61n09547 LinkIcon PS045607 LinkIcon 0.962
(+)-Epicatechin; MS2; QqQ; negative; CE 10 V
   (+)-Epicatechin
  EpCt-pl
  ent-Epicatechin
  Epicatechol
  (+)-3,3',4',5,7-Pentahydroxyflavan
ATH61n10242 LinkIcon PS045607 LinkIcon 0.954
(+)-Epicatechin; MS2; QqQ; negative; CE 10 V
   (+)-Epicatechin
  EpCt-pl
  ent-Epicatechin
  Epicatechol
  (+)-3,3',4',5,7-Pentahydroxyflavan
ATH61n09547 LinkIcon PS045507 LinkIcon 0.951
(+)-Catechin hydrate; MS2; QqQ; negative; CE 10 V
   (+)-Catechin hydrate
  Ct
  Cyanidanol
  Cianidanol
  Catechuic Acid
  Catechinic acid
  catechol
  trans-3,3',4',5,7-Pentahydroxyflavane
  3,3',4',5,7-Flavanpentol
  (2R,3S)-(+)-Catechin
  2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-1-Benzopyran-3,5,7-triol
ATH58n11288 LinkIcon PM018051 LinkIcon 0.949
Quercetin-3-Arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Quercetin-3-Arabinoside-7-rhamnoside
ATH11n05397 LinkIcon PS045508 LinkIcon 0.948
(+)-Catechin hydrate; MS2; QqQ; negative; CE 20 V
   (+)-Catechin hydrate
  Ct
  Cyanidanol
  Cianidanol
  Catechuic Acid
  Catechinic acid
  catechol
  trans-3,3',4',5,7-Pentahydroxyflavane
  3,3',4',5,7-Flavanpentol
  (2R,3S)-(+)-Catechin
  2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-1-Benzopyran-3,5,7-triol
ATH11n05845 LinkIcon PS045508 LinkIcon 0.947
(+)-Catechin hydrate; MS2; QqQ; negative; CE 20 V
   (+)-Catechin hydrate
  Ct
  Cyanidanol
  Cianidanol
  Catechuic Acid
  Catechinic acid
  catechol
  trans-3,3',4',5,7-Pentahydroxyflavane
  3,3',4',5,7-Flavanpentol
  (2R,3S)-(+)-Catechin
  2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-1-Benzopyran-3,5,7-triol
ATH61n10242 LinkIcon PS045507 LinkIcon 0.943
(+)-Catechin hydrate; MS2; QqQ; negative; CE 10 V
   (+)-Catechin hydrate
  Ct
  Cyanidanol
  Cianidanol
  Catechuic Acid
  Catechinic acid
  catechol
  trans-3,3',4',5,7-Pentahydroxyflavane
  3,3',4',5,7-Flavanpentol
  (2R,3S)-(+)-Catechin
  2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-1-Benzopyran-3,5,7-triol
ATH11n05845 LinkIcon PS045608 LinkIcon 0.937
(+)-Epicatechin; MS2; QqQ; negative; CE 20 V
   (+)-Epicatechin
  EpCt-pl
  ent-Epicatechin
  Epicatechol
  (+)-3,3',4',5,7-Pentahydroxyflavan
ATH11n05848 LinkIcon PM018051 LinkIcon 0.937
Quercetin-3-Arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Quercetin-3-Arabinoside-7-rhamnoside
ATH11n05397 LinkIcon PS045608 LinkIcon 0.936
(+)-Epicatechin; MS2; QqQ; negative; CE 20 V
   (+)-Epicatechin
  EpCt-pl
  ent-Epicatechin
  Epicatechol
  (+)-3,3',4',5,7-Pentahydroxyflavan
ATH11n05845 LinkIcon PS045810 LinkIcon 0.936
Procyanidin B2; MS2; QqQ; negative; CE 40 V
   Procyanidin B2
  (-)-Epicatechin-(4-beta-8)-(-)-epicatechin
  4,8'-Bi((+)-epicatechin))
  cis,cis'-4,8'-Bi(3,3',4',5,7-pentahydroxyflavane)
ATH61n10242 LinkIcon PS045810 LinkIcon 0.931
Procyanidin B2; MS2; QqQ; negative; CE 40 V
   Procyanidin B2
  (-)-Epicatechin-(4-beta-8)-(-)-epicatechin
  4,8'-Bi((+)-epicatechin))
  cis,cis'-4,8'-Bi(3,3',4',5,7-pentahydroxyflavane)
ATH61n09547 LinkIcon PS045508 LinkIcon 0.929
(+)-Catechin hydrate; MS2; QqQ; negative; CE 20 V
   (+)-Catechin hydrate
  Ct
  Cyanidanol
  Cianidanol
  Catechuic Acid
  Catechinic acid
  catechol
  trans-3,3',4',5,7-Pentahydroxyflavane
  3,3',4',5,7-Flavanpentol
  (2R,3S)-(+)-Catechin
  2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-1-Benzopyran-3,5,7-triol
ATH61n10242 LinkIcon PS045608 LinkIcon 0.929
(+)-Epicatechin; MS2; QqQ; negative; CE 20 V
   (+)-Epicatechin
  EpCt-pl
  ent-Epicatechin
  Epicatechol
  (+)-3,3',4',5,7-Pentahydroxyflavan
ATH61n09547 LinkIcon PS045810 LinkIcon 0.928
Procyanidin B2; MS2; QqQ; negative; CE 40 V
   Procyanidin B2
  (-)-Epicatechin-(4-beta-8)-(-)-epicatechin
  4,8'-Bi((+)-epicatechin))
  cis,cis'-4,8'-Bi(3,3',4',5,7-pentahydroxyflavane)
  (+)-Epicatechin
  EpCt-pl
  ent-Epicatechin
  Epicatechol
  (+)-3,3',4',5,7-Pentahydroxyflavan
ATH61n10242 LinkIcon PS045508 LinkIcon 0.928
(+)-Catechin hydrate; MS2; QqQ; negative; CE 20 V
   (+)-Catechin hydrate
  Ct
  Cyanidanol
  Cianidanol
  Catechuic Acid
  Catechinic acid
  catechol
  trans-3,3',4',5,7-Pentahydroxyflavane
  3,3',4',5,7-Flavanpentol
  (2R,3S)-(+)-Catechin
  2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-1-Benzopyran-3,5,7-triol
ATH11n05397 LinkIcon PS045810 LinkIcon 0.926
Procyanidin B2; MS2; QqQ; negative; CE 40 V
   Procyanidin B2
  (-)-Epicatechin-(4-beta-8)-(-)-epicatechin
  4,8'-Bi((+)-epicatechin))
  cis,cis'-4,8'-Bi(3,3',4',5,7-pentahydroxyflavane)
ATH14n08119 LinkIcon PM018051 LinkIcon 0.906
Quercetin-3-Arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Quercetin-3-Arabinoside-7-rhamnoside
ATH60n10354 LinkIcon PM018051 LinkIcon 0.901
Quercetin-3-Arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Quercetin-3-Arabinoside-7-rhamnoside
ATH07n07089 LinkIcon - -
-
ATH09n09294 LinkIcon - -
-
ATH10n06878 LinkIcon - -
-
ATH11n05400 LinkIcon - -
-
ATH12n05274 LinkIcon - -
-
ATH12n05707 LinkIcon - -
-
ATH13n08664 LinkIcon - -
-
ATH14n08345 LinkIcon - -
-
ATH14n09084 LinkIcon - -
-
ATH14n09087 LinkIcon - -
-
ATH56n10637 LinkIcon - -
-
ATH56n11645 LinkIcon - -
-
ATH57n10533 LinkIcon - -
-
ATH57n11493 LinkIcon - -
-
ATH58n11801 LinkIcon - -
-
ATH59n10746 LinkIcon - -
-
ATH60n11565 LinkIcon - -
-
ATH61n09550 LinkIcon - -
-
ATH61n10245 LinkIcon - -
-
ATH62n09857 LinkIcon - -
-
ATH62n11025 LinkIcon - -
-
ATH63n09968 LinkIcon - -
-
ATH63n11226 LinkIcon - -
-
ATH63n11230 LinkIcon - -
-
ATH64n10015 LinkIcon - -
-
ATH64n10271 LinkIcon - -
-
ATH64n11196 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g21850
LinkIcon
eFP
TAIR
SKU5 similar 8 - SKU5 similar 8 (sks8); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 7 (TAIR:AT1G21860.1); Has 5145 Blast hits to 5091 proteins in 951 species: Archae - 16; Bacteria - 1604; Metazoa - 263; Fungi - 1857; Plants - 1262; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).
2
at1g57750
LinkIcon
eFP
TAIR
cytochrome P450, family 96, subfamily A, polypeptide 15 Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis. "cytochrome P450, family 96, subfamily A, polypeptide 15" (CYP96A15); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 96, subfamily A, polypeptide 3 (TAIR:AT1G65340.1); Has 29548 Blast hits to 29460 proteins in 1520 species: Archae - 47; Bacteria - 3050; Metazoa - 10477; Fungi - 6558; Plants - 8176; Viruses - 3; Other Eukaryotes - 1237 (source: NCBI BLink).
3
at1g75900
LinkIcon
eFP
TAIR
GDSL-like Lipase/Acylhydrolase superfamily protein - GDSL-like Lipase/Acylhydrolase superfamily protein; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT1G75880.2); Has 3444 Blast hits to 3405 proteins in 204 species: Archae - 0; Bacteria - 282; Metazoa - 0; Fungi - 26; Plants - 3125; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
4
at2g39640
LinkIcon
eFP
TAIR
glycosyl hydrolase family 17 protein - glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT3G55430.1); Has 4106 Blast hits to 2815 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 85; Plants - 4010; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
5
at3g14530
LinkIcon
eFP
TAIR
Terpenoid synthases superfamily protein - Terpenoid synthases superfamily protein; FUNCTIONS IN: farnesyltranstransferase activity; INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: geranylgeranyl pyrophosphate synthase 3 (TAIR:AT3G14550.1); Has 16918 Blast hits to 16911 proteins in 2965 species: Archae - 341; Bacteria - 9533; Metazoa - 310; Fungi - 484; Plants - 460; Viruses - 12; Other Eukaryotes - 5778 (source: NCBI BLink).
6
at3g14550
LinkIcon
eFP
TAIR
geranylgeranyl pyrophosphate synthase 3 Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. geranylgeranyl pyrophosphate synthase 3 (GGPS3); CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: Terpenoid synthases superfamily protein (TAIR:AT3G14530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
7
at3g45610
LinkIcon
eFP
TAIR
Dof-type zinc finger DNA-binding family protein - Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: TARGET OF MONOPTEROS 6 (TAIR:AT5G60200.1); Has 1099 Blast hits to 1094 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1090; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
8
at4g21480
LinkIcon
eFP
TAIR
sugar transporter protein 12 Putative sugar transporter. Expressed in nematode-induced root syncytia. sugar transporter protein 12 (STP12); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to nematode; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter 1 (TAIR:AT1G11260.1); Has 29334 Blast hits to 28788 proteins in 2015 species: Archae - 490; Bacteria - 14513; Metazoa - 3914; Fungi - 6644; Plants - 2469; Viruses - 2; Other Eukaryotes - 1302 (source: NCBI BLink).
9
at5g46040
LinkIcon
eFP
TAIR
Major facilitator superfamily protein - Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 3 (TAIR:AT5G46050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Creative Commons License
RIKEN Center for Sustainable Resource Science
Integrated Genome Informatics Research Unit