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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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Keyword
AGI locus IDs

Choosing cell X:" 14 " Y:" 17 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn141174 LinkIcon Negative ATH59n20019 LinkIcon - -
-
2 adp005457 LinkIcon Positive ATH10p02343 LinkIcon PS058401 LinkIcon 0.985
Abscisic acid; MS2; QqQ; positive; CE 10 V
   Abscisic acid
  ABA
  Abscisate
  Abscisic acid
  Dormin
  (S)-5-(1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl)-3-methyl-(2Z,4E)-pentadienoic acid
ATH10p03345 LinkIcon PS058401 LinkIcon 0.983
Abscisic acid; MS2; QqQ; positive; CE 10 V
   Abscisic acid
  ABA
  Abscisate
  Abscisic acid
  Dormin
  (S)-5-(1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl)-3-methyl-(2Z,4E)-pentadienoic acid
ATH07p02631 LinkIcon PS058401 LinkIcon 0.979
Abscisic acid; MS2; QqQ; positive; CE 10 V
   Abscisic acid
  ABA
  Abscisate
  Abscisic acid
  Dormin
  (S)-5-(1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl)-3-methyl-(2Z,4E)-pentadienoic acid
ATH59p03728 LinkIcon PS058401 LinkIcon 0.978
Abscisic acid; MS2; QqQ; positive; CE 10 V
   Abscisic acid
  ABA
  Abscisate
  Abscisic acid
  Dormin
  (S)-5-(1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl)-3-methyl-(2Z,4E)-pentadienoic acid
ATH59p02429 LinkIcon PS058401 LinkIcon 0.976
Abscisic acid; MS2; QqQ; positive; CE 10 V
   Abscisic acid
  ABA
  Abscisate
  Abscisic acid
  Dormin
  (S)-5-(1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl)-3-methyl-(2Z,4E)-pentadienoic acid
ATH07p03573 LinkIcon PS058401 LinkIcon 0.975
Abscisic acid; MS2; QqQ; positive; CE 10 V
   Abscisic acid
  ABA
  Abscisate
  Abscisic acid
  Dormin
  (S)-5-(1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl)-3-methyl-(2Z,4E)-pentadienoic acid
ATH10p02343 LinkIcon PM014414 LinkIcon 0.962
Cyclo(Val-Phe); MS2; QIT; M+H; 35%
   Cyclo(Val-Phe)
ATH10p03345 LinkIcon PM014414 LinkIcon 0.958
Cyclo(Val-Phe); MS2; QIT; M+H; 35%
   Cyclo(Val-Phe)
ATH07p02631 LinkIcon PM014414 LinkIcon 0.954
Cyclo(Val-Phe); MS2; QIT; M+H; 35%
   Cyclo(Val-Phe)
ATH07p03573 LinkIcon PM014414 LinkIcon 0.952
Cyclo(Val-Phe); MS2; QIT; M+H; 35%
   Cyclo(Val-Phe)
ATH12p03568 LinkIcon PS058401 LinkIcon 0.951
Abscisic acid; MS2; QqQ; positive; CE 10 V
   Abscisic acid
  ABA
  Abscisate
  Abscisic acid
  Dormin
  (S)-5-(1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl)-3-methyl-(2Z,4E)-pentadienoic acid
ATH57p02707 LinkIcon PS058401 LinkIcon 0.950
Abscisic acid; MS2; QqQ; positive; CE 10 V
   Abscisic acid
  ABA
  Abscisate
  Abscisic acid
  Dormin
  (S)-5-(1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl)-3-methyl-(2Z,4E)-pentadienoic acid
ATH59p03728 LinkIcon PM014414 LinkIcon 0.950
Cyclo(Val-Phe); MS2; QIT; M+H; 35%
   Cyclo(Val-Phe)
ATH09p02902 LinkIcon PS058401 LinkIcon 0.948
Abscisic acid; MS2; QqQ; positive; CE 10 V
   Abscisic acid
  ABA
  Abscisate
  Abscisic acid
  Dormin
  (S)-5-(1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl)-3-methyl-(2Z,4E)-pentadienoic acid
ATH59p02429 LinkIcon PM014414 LinkIcon 0.948
Cyclo(Val-Phe); MS2; QIT; M+H; 35%
   Cyclo(Val-Phe)
ATH12p02847 LinkIcon PS058401 LinkIcon 0.943
Abscisic acid; MS2; QqQ; positive; CE 10 V
   Abscisic acid
  ABA
  Abscisate
  Abscisic acid
  Dormin
  (S)-5-(1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl)-3-methyl-(2Z,4E)-pentadienoic acid
ATH09p02902 LinkIcon PM014414 LinkIcon 0.941
Cyclo(Val-Phe); MS2; QIT; M+H; 35%
   Cyclo(Val-Phe)
ATH11p02651 LinkIcon PS058401 LinkIcon 0.940
Abscisic acid; MS2; QqQ; positive; CE 10 V
   Abscisic acid
  ABA
  Abscisate
  Abscisic acid
  Dormin
  (S)-5-(1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl)-3-methyl-(2Z,4E)-pentadienoic acid
ATH12p02844 LinkIcon PS078302 LinkIcon 0.936
L-Glycerol-2-phosphate Disodium Salt n-Hydrate; MS2; QqQ; positive; CE 20 V
   L-Glycerol-2-phosphate Disodium Salt n-Hydrate
  Glycerophosphate
PS062202 LinkIcon 0.929
Disodium Glycerophoshate 5.5-Hydrate; MS2; QqQ; positive; CE 20 V
   Disodium Glycerophoshate 5.5-Hydrate
  Glycerol Phosphate
PS033502 LinkIcon 0.926
rac-Glycerol 3-phosphoate disodium salt hexahydrate; MS2; QqQ; positive; CE 20 V
   rac-Glycerol 3-phosphoate disodium salt hexahydrate
  sn-Gro-1P
  glycero-3P
  glycero-1P
  glycerophosphoric acid
  rac-Glycerol 1-phosphate
  DL-alpha-Glycerophosphate
ATH57p02707 LinkIcon PM014414 LinkIcon 0.926
Cyclo(Val-Phe); MS2; QIT; M+H; 35%
   Cyclo(Val-Phe)
ATH12p02844 LinkIcon PS010802 LinkIcon 0.924
Lithium potassium Acetyl phosphate; MS2; QqQ; positive; CE 20 V
   Lithium potassium Acetyl phosphate
  Acetyl phosphate lithium potassium salt
ATH13p02377 LinkIcon PS078302 LinkIcon 0.924
L-Glycerol-2-phosphate Disodium Salt n-Hydrate; MS2; QqQ; positive; CE 20 V
   L-Glycerol-2-phosphate Disodium Salt n-Hydrate
  Glycerophosphate
ATH12p03568 LinkIcon PM014414 LinkIcon 0.921
Cyclo(Val-Phe); MS2; QIT; M+H; 35%
   Cyclo(Val-Phe)
ATH13p02377 LinkIcon PS062202 LinkIcon 0.915
Disodium Glycerophoshate 5.5-Hydrate; MS2; QqQ; positive; CE 20 V
   Disodium Glycerophoshate 5.5-Hydrate
  Glycerol Phosphate
PS033502 LinkIcon 0.914
rac-Glycerol 3-phosphoate disodium salt hexahydrate; MS2; QqQ; positive; CE 20 V
   rac-Glycerol 3-phosphoate disodium salt hexahydrate
  sn-Gro-1P
  glycero-3P
  glycero-1P
  glycerophosphoric acid
  rac-Glycerol 1-phosphate
  DL-alpha-Glycerophosphate
PS010802 LinkIcon 0.910
Lithium potassium Acetyl phosphate; MS2; QqQ; positive; CE 20 V
   Lithium potassium Acetyl phosphate
  Acetyl phosphate lithium potassium salt
ATH11p02651 LinkIcon PM014414 LinkIcon 0.909
Cyclo(Val-Phe); MS2; QIT; M+H; 35%
   Cyclo(Val-Phe)
ATH12p02844 LinkIcon PT103250 LinkIcon 0.909
4-Nitrophenol; MS2; Q-Tof; [M+H]+
   4-Nitrophenol
  PNP
  p-Nitrophenol
  4-Nitrohydroxybenzene
  4-Hydroxynitrobenzene
  Niphen
  Paranitrophenol
  4-nitrophenol
ATH06p02632 LinkIcon PS058401 LinkIcon 0.908
Abscisic acid; MS2; QqQ; positive; CE 10 V
   Abscisic acid
  ABA
  Abscisate
  Abscisic acid
  Dormin
  (S)-5-(1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl)-3-methyl-(2Z,4E)-pentadienoic acid
ATH12p02844 LinkIcon PS058903 LinkIcon 0.908
DL-Glyceraldehyde 3-phosphate solution; MS2; QqQ; positive; CE 30 V
   DL-Glyceraldehyde 3-phosphate solution
  Glyceraldehyde-3P
PS109801 LinkIcon 0.907
Maleic acid; MS2; QqQ; positive; CE 10 V
   Maleic acid
  Maleinic acid
  Malenic acid
  Toxilic acid
  cis-butenedioic acid
  maleate
  Maleinic acid
  Malenic acid
  2-Butenedioic acid
  (Z)-1,2-Ethenedicarboxylic Acid
PS123201 LinkIcon 0.905
alpha-L-(-)-Fucose 1-phosphate bis(cyclohexylammonium) salt ; MS2; QqQ; positive; CE 10 V
   alpha-L-(-)-Fucose 1-phosphate bis(cyclohexylammonium) salt
  alpha-Fuc-1P
  alpha-Fucopyranosyl phosphate
  6-Deoxy-alpha-L-galactose phosphate
ATH12p02847 LinkIcon PM014414 LinkIcon 0.905
Cyclo(Val-Phe); MS2; QIT; M+H; 35%
   Cyclo(Val-Phe)
ATH12p02844 LinkIcon PS112603 LinkIcon 0.901
alpha-D-glucose-1-phosphate dipotassium salt dihydate; MS2; QqQ; positive; CE 30 V
   alpha-D-glucose-1-phosphate dipotassium salt dihydate
  alpha-Glu-1P
  alpha-D-Glucopyranose 1-phosphate
ATH10p03032 LinkIcon - -
-
ATH57p03548 LinkIcon - -
-
ATH58p02427 LinkIcon - -
-
ATH59p03529 LinkIcon - -
-
ATH62p02429 LinkIcon - -
-
ATH62p03685 LinkIcon - -
-
ATH63p02420 LinkIcon - -
-
ATH63p02688 LinkIcon - -
-
ATH63p02696 LinkIcon - -
-
ATH63p03538 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g12520
copper chaperone for SOD1 Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta. copper chaperone for SOD1 (CCS); FUNCTIONS IN: superoxide dismutase copper chaperone activity, superoxide dismutase activity; INVOLVED IN: cellular copper ion homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc binding (InterPro:IPR001424), Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 2 (TAIR:AT2G28190.1); Has 3500 Blast hits to 3494 proteins in 885 species: Archae - 2; Bacteria - 672; Metazoa - 1229; Fungi - 394; Plants - 875; Viruses - 122; Other Eukaryotes - 206 (source: NCBI BLink).
2
at2g15620
nitrite reductase 1 Involved in the second step of nitrate assimilation. Its expression is induced by nitrate. nitrite reductase 1 (NIR1); FUNCTIONS IN: ferredoxin-nitrate reductase activity, nitrite reductase (NO-forming) activity; INVOLVED IN: response to salt stress, response to nitrate; LOCATED IN: mitochondrion, apoplast, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nitrite/sulphite reductase iron-sulphur/siroheam-binding site (InterPro:IPR006066), Nitrite/sulphite reductase 4Fe-4S domain (InterPro:IPR006067), Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like (InterPro:IPR005117); BEST Arabidopsis thaliana protein match is: sulfite reductase (TAIR:AT5G04590.1); Has 5959 Blast hits to 5874 proteins in 1733 species: Archae - 294; Bacteria - 4692; Metazoa - 2; Fungi - 157; Plants - 240; Viruses - 0; Other Eukaryotes - 574 (source: NCBI BLink).
3
at2g31790
UDP-Glycosyltransferase superfamily protein - UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: Uridine diphosphate glycosyltransferase 74E2 (TAIR:AT1G05680.1); Has 8757 Blast hits to 8682 proteins in 575 species: Archae - 0; Bacteria - 847; Metazoa - 2565; Fungi - 65; Plants - 5076; Viruses - 120; Other Eukaryotes - 84 (source: NCBI BLink).
4
at3g49680
branched-chain aminotransferase 3 Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. branched-chain aminotransferase 3 (BCAT3); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.1); Has 12479 Blast hits to 12479 proteins in 2523 species: Archae - 154; Bacteria - 7638; Metazoa - 266; Fungi - 416; Plants - 252; Viruses - 0; Other Eukaryotes - 3753 (source: NCBI BLink).
5
at5g63180
Pectin lyase-like superfamily protein - Pectin lyase-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G24780.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

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Integrated Genome Informatics Research Unit