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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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Keyword
AGI locus IDs

Choosing cell X:" 21 " Y:" 2 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn028061 LinkIcon Negative ATH09n05892 LinkIcon - -
-
ATH12n02489 LinkIcon - -
-
ATH14n04628 LinkIcon - -
-
ATH14n05153 LinkIcon - -
-
ATH60n06012 LinkIcon - -
-
ATH60n06718 LinkIcon - -
-
ATH62n05660 LinkIcon - -
-
ATH62n06848 LinkIcon - -
-
ATH64n06095 LinkIcon - -
-
ATH64n06475 LinkIcon - -
-
2 adp005726 LinkIcon Positive ATH13p03186 LinkIcon PM018106 LinkIcon 0.966
Vanilloylcholine 4-O-hexoside; MS2; Q-TOF; M+H; 15->55V
   Vanilloylcholine 4-O-hexoside
  4-Hexosyloxy-3-methoxybenzoylcholine
ATH07p03116 LinkIcon - -
-
ATH07p03675 LinkIcon - -
-
ATH09p03158 LinkIcon - -
-
ATH09p03717 LinkIcon - -
-
ATH10p03057 LinkIcon - -
-
ATH10p03600 LinkIcon - -
-
ATH11p03133 LinkIcon - -
-
ATH11p03733 LinkIcon - -
-
ATH12p03089 LinkIcon - -
-
ATH12p03671 LinkIcon - -
-
ATH13p03916 LinkIcon - -
-
ATH14p03201 LinkIcon - -
-
ATH14p03916 LinkIcon - -
-
ATH57p03233 LinkIcon - -
-
ATH57p03838 LinkIcon - -
-
ATH59p03226 LinkIcon - -
-
ATH59p03861 LinkIcon - -
-
ATH61p05401 LinkIcon - -
-
ATH62p03219 LinkIcon - -
-
ATH62p03792 LinkIcon - -
-
ATH63p03230 LinkIcon - -
-
ATH63p03250 LinkIcon - -
-
ATH63p03768 LinkIcon - -
-
ATH63p03860 LinkIcon - -
-
ATH63p04038 LinkIcon - -
-
ATH64p03516 LinkIcon - -
-
ATH64p03768 LinkIcon - -
-
ATH64p04026 LinkIcon - -
-
3 adp016021 LinkIcon Positive ATH58p08503 LinkIcon PT104190 LinkIcon 0.983
isorhamnetin-3-O-glucoside; MS2; Q-Tof; [M+H]+
   isorhamnetin-3-O-glucoside
  Isor-3-Glc
  Isorhamnetin-3-beta-D-galactopyranoside
  5,7-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxychromen-4-one
PT109140 LinkIcon 0.970
Isorhamnetin-3-Glucoside-4'-Glucoside; MS2; Q-Tof; [M+H]+
   Isorhamnetin-3-Glucoside-4'-Glucoside
  Isor-3-Glc-4'-Glc
  Isorhamnetin 3,4'-diglucoside
  Dactylin
  Dactilin
PM018139 LinkIcon 0.967
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
  n-Propionyl coenzyme A lithium salt
  propionyl-CoA
PS041003 LinkIcon 0.964
Rhamnetin; MS2; QqQ; positive; CE 30 V
   Rhamnetin
  Ramn
  3,3',4',5-tetrahydroxy-7-methoxyflavone
  beta-Rhamnocitrin
  7-Methoxyquercetin
  7-methylquercetin
  Quercetin 7-methyl ether
  4H-1-Benzopyran-4-one, 2-(3,4-dihydroxyphenyl)-3,5-dihydroxy-7-methoxy-
  n-Propionyl coenzyme A lithium salt
  propionyl-CoA
PT112180 LinkIcon 0.961
Petunidin-3-O-beta-glucopyranoside; MS2; Q-Tof; [M]+
   Petunidin-3-O-beta-glucopyranoside
  Pt 3-Glc
  Petunidin 3-glucoside
  (2S,3R,4S,5S,6R)-2-[2-(3,4-dihydroxy-5-methoxyphenyl)-5,7-dihydroxychromenylium-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol
PT104010 LinkIcon 0.960
Isorhamnetin; MS2; Q-Tof; [M+H]+
   Isorhamnetin
  Isor
  3,4',5,7-tetrahydroxy-3'-methoxy flavone
  3-Methylquercetin
  Isorhamnetol
  3'-Methoxyquercetin
  3'-Methoxy-3,4',5,7-tetrahydroxyflavone
  3'-O-Methylquercetin
  Tamarixetin
  3,5,7-trihydroxy-2-(4-hydroxy-3-methoxyphenyl)chromen-4-one
  isorhamnetin-3-rutinoside
  Isor-3-Glc-6''-Rha
  Isorhamnetin-3-Glucoside-6''-Rhamnoside
  Narcissin
  Nar
PT109310 LinkIcon 0.959
Quercetin-3-Galactoside-6-Rhamnoside-3'''-Rhamnoside; MS2; Q-Tof; [M+H]+
   Quercetin-3-Galactoside-6''-Rhamnoside-3'''-Rhamnoside
  Quer-3-Gal-6''-Rha-3'''-Rha
ATH12p06991 LinkIcon PT112530 LinkIcon 0.915
Calciferol; MS2; Q-Tof; [M+H]+
   Calciferol
  Vitamin D2
  Ergocalciferol
  Viosterin
  Osteil
  Viosterol
  Ercalciol
  Irradiated ergosterol
  Condacaps
  Condocaps
  Condol
  Crtron
  Crystallina
  Daral
  (5Z,7E,22E)-(3S)-9,10-Secoergosta-5,7,10(19),22-tetraen-3-ol
  Davitin
  Deltalin
  Deratol
  Diactol
  Drisdol
  Ergorone
  Ertron
  Fortodyl
  Geltabs
  Hyperkil
  Irradiated ergosta-5,7,22-trien-3-beta-ol
  Metadee
ATH06p07096 LinkIcon - -
-
ATH06p07374 LinkIcon - -
-
ATH08p07327 LinkIcon - -
-
ATH08p07858 LinkIcon - -
-
ATH12p06585 LinkIcon - -
-
ATH12p06586 LinkIcon - -
-
ATH12p06988 LinkIcon - -
-
ATH14p07762 LinkIcon - -
-
ATH14p08309 LinkIcon - -
-
ATH56p07018 LinkIcon - -
-
ATH56p07570 LinkIcon - -
-
ATH58p09221 LinkIcon - -
-
ATH61p08760 LinkIcon - -
-
ATH61p09179 LinkIcon - -
-
ATH62p06257 LinkIcon - -
-
ATH62p06636 LinkIcon - -
-
ATH64p08908 LinkIcon - -
-
ATH64p09651 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g01190
cytochrome P450, family 78, subfamily A, polypeptide 8 member of CYP78A "cytochrome P450, family 78, subfamily A, polypeptide 8" (CYP78A8); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, LP.02 two leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 78, subfamily A, polypeptide 6 (TAIR:AT2G46660.1); Has 32104 Blast hits to 32001 proteins in 1725 species: Archae - 48; Bacteria - 3617; Metazoa - 11430; Fungi - 6777; Plants - 9112; Viruses - 3; Other Eukaryotes - 1117 (source: NCBI BLink).
2
at1g04180
YUCCA 9 - YUCCA 9 (YUC9); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G43890.1); Has 11871 Blast hits to 11852 proteins in 1762 species: Archae - 17; Bacteria - 7034; Metazoa - 796; Fungi - 1508; Plants - 659; Viruses - 0; Other Eukaryotes - 1857 (source: NCBI BLink).
3
at1g15210
pleiotropic drug resistance 7 - pleiotropic drug resistance 7 (PDR7); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: drug transmembrane transport; LOCATED IN: plasma membrane, chloroplast, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC-2 and Plant PDR ABC-type transporter family protein (TAIR:AT1G59870.1); Has 383488 Blast hits to 290790 proteins in 4017 species: Archae - 7218; Bacteria - 309544; Metazoa - 9443; Fungi - 7090; Plants - 6323; Viruses - 4; Other Eukaryotes - 43866 (source: NCBI BLink).
4
at2g43610
Chitinase family protein - Chitinase family protein; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43620.1); Has 3095 Blast hits to 2792 proteins in 589 species: Archae - 0; Bacteria - 708; Metazoa - 34; Fungi - 309; Plants - 1802; Viruses - 51; Other Eukaryotes - 191 (source: NCBI BLink).
5
at3g01220
homeobox protein 20 Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Expressed during seed germination in the micropylar endosperm and in the root cap, and increases ABA sensitivity and seed dormancy when mutated. homeobox protein 20 (HB20); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox 3 (TAIR:AT5G15150.1); Has 9615 Blast hits to 9578 proteins in 515 species: Archae - 0; Bacteria - 1; Metazoa - 7277; Fungi - 141; Plants - 2025; Viruses - 4; Other Eukaryotes - 167 (source: NCBI BLink).
6
at3g24240
Leucine-rich repeat receptor-like protein kinase family protein - Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT5G48940.1); Has 246558 Blast hits to 135557 proteins in 3810 species: Archae - 176; Bacteria - 24262; Metazoa - 71588; Fungi - 10499; Plants - 111580; Viruses - 361; Other Eukaryotes - 28092 (source: NCBI BLink).
7
at4g08770
Peroxidase superfamily protein - Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: vacuole; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT4G08780.1); Has 4348 Blast hits to 4314 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 40; Plants - 4262; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
8
at4g15340
pentacyclic triterpene synthase 1 Encodes a protein that catalyzes the production of the tricyclic triterpene arabidiol when expressed in yeast. pentacyclic triterpene synthase 1 (PEN1); CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: baruol synthase 1 (TAIR:AT4G15370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
9
at4g20230
Terpenoid cyclases/Protein prenyltransferases superfamily protein - Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT4G20200.1); Has 1640 Blast hits to 1613 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 1633; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
10
at5g10720
histidine kinase 5 member of Histidine Kinase histidine kinase 5 (HK5); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: cytokinin mediated signaling pathway; LOCATED IN: vacuole; EXPRESSED IN: male gametophyte, root; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CheY-like (InterPro:IPR011006), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), ATPase-like, ATP-binding domain (InterPro:IPR003594), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein-related (TAIR:AT5G10680.1); Has 142896 Blast hits to 126384 proteins in 3154 species: Archae - 1152; Bacteria - 126386; Metazoa - 257; Fungi - 2334; Plants - 2049; Viruses - 33; Other Eukaryotes - 10685 (source: NCBI BLink).
11
at5g24070
Peroxidase superfamily protein - Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G43480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

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Integrated Genome Informatics Research Unit