Home Gene search Metabolite search PRIMe
 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
 Highlight filters
Keyword
AGI locus IDs

Choosing cell X:" 21 " Y:" 21 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adp008652 LinkIcon Positive ATH07p04818 LinkIcon PT104920 LinkIcon 0.933
pyridoxal hydrochrolide; MS2; Q-Tof; [M+H]+
   Pyridoxal hydrochrolide
  PL
  PL-HCl
  Vitamin B6
  Pyridoxaldehyde
  3-Hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde
  Hydroxy-5-hydroxymethyl-2-methylisonicotinaldehyde
  3-hydroxy-5-(hydroxymethyl)-2-methylpyridine-4-carbaldehyde
ATH12p04521 LinkIcon PT104920 LinkIcon 0.929
pyridoxal hydrochrolide; MS2; Q-Tof; [M+H]+
   Pyridoxal hydrochrolide
  PL
  PL-HCl
  Vitamin B6
  Pyridoxaldehyde
  3-Hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde
  Hydroxy-5-hydroxymethyl-2-methylisonicotinaldehyde
  3-hydroxy-5-(hydroxymethyl)-2-methylpyridine-4-carbaldehyde
ATH07p04818 LinkIcon PS062003 LinkIcon 0.921
Pyridoxal-5'-phosphate monohydrate ; MS2; QqQ; positive; CE 30 V
   Pyridoxal-5'-phosphate monohydrate
  PLP
  Pyridoxal-5P
  Codecarboxylase
  Pyridoxal 5-phosphate
  3-Hydroxy-2-methyl-5-((phosphonooxy)methyl)-4-pyridinecarboxaldehyde
  Pyromijin
  Hairoxal
  Pidopidon
PS010602 LinkIcon 0.912
3-Methyladenine; MS2; QqQ; positive; CE 20 V
   3-Methyladenine
  6-Amino-3-methylpurine
  (R)-(-)-Phenylephrine hydrochloride
  Neo-Synephrine
  Metasympatol
  Visadron
  Mesaton
  Mezaton
  Metaoxedrine
  m-Sympatol
  m-Oxedrine
  (R)-(?)-1-(3-Hydroxyphenyl)-2-methylaminoethanol hydrochloride
  L-(3-Hydroxyphenyl)-N-methylethanolamine hydrochloride
ATH09p04935 LinkIcon PT104920 LinkIcon 0.911
pyridoxal hydrochrolide; MS2; Q-Tof; [M+H]+
   Pyridoxal hydrochrolide
  PL
  PL-HCl
  Vitamin B6
  Pyridoxaldehyde
  3-Hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde
  Hydroxy-5-hydroxymethyl-2-methylisonicotinaldehyde
  3-hydroxy-5-(hydroxymethyl)-2-methylpyridine-4-carbaldehyde
ATH07p04818 LinkIcon PS049202 LinkIcon 0.909
Pyridoxal hydrochrolide; MS2; QqQ; positive; CE 20 V
   Pyridoxal hydrochrolide
  PL
  PL-HCl
  Vitamin B6
  Pyridoxaldehyde
  3-Hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde
  Hydroxy-5-hydroxymethyl-2-methylisonicotinaldehyde
ATH09p04935 LinkIcon PS062003 LinkIcon 0.901
Pyridoxal-5'-phosphate monohydrate ; MS2; QqQ; positive; CE 30 V
   Pyridoxal-5'-phosphate monohydrate
  PLP
  Pyridoxal-5P
  Codecarboxylase
  Pyridoxal 5-phosphate
  3-Hydroxy-2-methyl-5-((phosphonooxy)methyl)-4-pyridinecarboxaldehyde
  Pyromijin
  Hairoxal
  Pidopidon
PS002002 LinkIcon 0.900
(R)-(-)-Phenylephrine hydrochloride; MS2; QqQ; positive; CE 20 V
   (R)-(-)-Phenylephrine hydrochloride
  Neo-Synephrine
  Metasympatol
  Visadron
  Mesaton
  Mezaton
  Metaoxedrine
  m-Sympatol
  m-Oxedrine
  (R)-(?)-1-(3-Hydroxyphenyl)-2-methylaminoethanol hydrochloride
  L-(3-Hydroxyphenyl)-N-methylethanolamine hydrochloride
  3-Methyladenine
  6-Amino-3-methylpurine
  Pyridoxal hydrochrolide
  PL
  PL-HCl
  Vitamin B6
  Pyridoxaldehyde
ATH08p04994 LinkIcon - -
-
ATH12p04462 LinkIcon - -
-
ATH14p05072 LinkIcon - -
-
ATH56p04586 LinkIcon - -
-
ATH56p05066 LinkIcon - -
-
ATH58p04783 LinkIcon - -
-
ATH61p06135 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g17840
white-brown complex homolog protein 11 Encodes a plasma membrane-localized ATP-binding cassette transporter, that is required for cutin transport to the extracellular matrix. white-brown complex homolog protein 11 (WBC11); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, fatty acid transporter activity; INVOLVED IN: cutin transport, fatty acid transport; LOCATED IN: plasma membrane, external side of plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G21090.1); Has 367567 Blast hits to 338203 proteins in 4071 species: Archae - 6733; Bacteria - 294034; Metazoa - 7509; Fungi - 6244; Plants - 5251; Viruses - 10; Other Eukaryotes - 47786 (source: NCBI BLink).
2
at1g48480
receptor-like kinase 1 Arabidopsis thaliana receptor-like protein kinase (RKL1) gene receptor-like kinase 1 (RKL1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: receptor-like kinase 902 (TAIR:AT3G17840.1); Has 150712 Blast hits to 111636 proteins in 3789 species: Archae - 114; Bacteria - 11711; Metazoa - 42617; Fungi - 8101; Plants - 71209; Viruses - 324; Other Eukaryotes - 16636 (source: NCBI BLink).
3
at1g52310
protein kinase family protein / C-type lectin domain-containing protein - protein kinase family protein / C-type lectin domain-containing protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C-type lectin (InterPro:IPR001304), Protein kinase, catalytic domain (InterPro:IPR000719), C-type lectin fold (InterPro:IPR016187), Tyrosine-protein kinase, active site (InterPro:IPR008266), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), C-type lectin-like (InterPro:IPR016186); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G61860.1); Has 99398 Blast hits to 98054 proteins in 3684 species: Archae - 81; Bacteria - 11858; Metazoa - 37328; Fungi - 6469; Plants - 30414; Viruses - 265; Other Eukaryotes - 12983 (source: NCBI BLink).
4
at1g66350
RGA-like 1 Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development. RGA-like 1 (RGL1); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: RGA-like 2 (TAIR:AT3G03450.1); Has 2708 Blast hits to 2634 proteins in 311 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2704; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
5
at2g23170
Auxin-responsive GH3 family protein encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. GH3.3; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT4G37390.1); Has 1734 Blast hits to 1530 proteins in 236 species: Archae - 0; Bacteria - 610; Metazoa - 53; Fungi - 2; Plants - 676; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink).
6
at2g35340
helicase domain-containing protein - maternal effect embryo arrest 29 (MEE29); FUNCTIONS IN: helicase activity, ATP-dependent RNA helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT1G32490.1); Has 27494 Blast hits to 21402 proteins in 1991 species: Archae - 43; Bacteria - 4684; Metazoa - 8996; Fungi - 2538; Plants - 1485; Viruses - 1677; Other Eukaryotes - 8071 (source: NCBI BLink).
7
at2g47240
AMP-dependent synthetase and ligase family protein Encodes an acyl-CoA synthetase that acts on long-chain and very-long-chain fatty acids, involved in cuticular wax and cutin biosynthesis LONG-CHAIN ACYL-COA SYNTHASE 1 (LACS1); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity, very long-chain fatty acid-CoA ligase activity; INVOLVED IN: fatty acid biosynthetic process, cutin biosynthetic process, wax biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT4G23850.1); Has 55133 Blast hits to 51773 proteins in 3295 species: Archae - 1024; Bacteria - 35525; Metazoa - 2495; Fungi - 1959; Plants - 1853; Viruses - 1; Other Eukaryotes - 12276 (source: NCBI BLink).
8
at3g44610
Protein kinase superfamily protein - Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6 protein kinase like 2 (TAIR:AT5G47750.1); Has 99456 Blast hits to 74546 proteins in 2417 species: Archae - 35; Bacteria - 11117; Metazoa - 41933; Fungi - 12113; Plants - 14694; Viruses - 280; Other Eukaryotes - 19284 (source: NCBI BLink).
9
at5g14700
NAD(P)-binding Rossmann-fold superfamily protein - NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G23910.1); Has 4116 Blast hits to 4108 proteins in 752 species: Archae - 4; Bacteria - 797; Metazoa - 69; Fungi - 490; Plants - 1968; Viruses - 42; Other Eukaryotes - 746 (source: NCBI BLink).
10
at5g16190
cellulose synthase like A11 encodes a gene similar to cellulose synthase cellulose synthase like A11 (CSLA11); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: cellulose synthase-like A10 (TAIR:AT1G24070.1); Has 4862 Blast hits to 4856 proteins in 1449 species: Archae - 192; Bacteria - 3834; Metazoa - 9; Fungi - 83; Plants - 479; Viruses - 11; Other Eukaryotes - 254 (source: NCBI BLink).
11
at5g41870
Pectin lyase-like superfamily protein - Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G23820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
12
at5g53200
Homeodomain-like superfamily protein - TRIPTYCHON (TRY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G30420.1); Has 2274 Blast hits to 2274 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 2256; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

Creative Commons License
RIKEN Center for Sustainable Resource Science
Integrated Genome Informatics Research Unit