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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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Keyword
AGI locus IDs

Choosing cell X:" 23 " Y:" 25 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn060338 LinkIcon Negative ATH06n09206 LinkIcon PM018086 LinkIcon 1.000
Spermidine-dihydroxyferuloyl-sinapyl; MS2; Q-TOF; M-H; 15->55V
   Spermidine-dihydroxyferuloyl-sinapyl
ATH06n09209 LinkIcon PM018086 LinkIcon 0.998
Spermidine-dihydroxyferuloyl-sinapyl; MS2; Q-TOF; M-H; 15->55V
   Spermidine-dihydroxyferuloyl-sinapyl
ATH08n12869 LinkIcon PM018086 LinkIcon 0.998
Spermidine-dihydroxyferuloyl-sinapyl; MS2; Q-TOF; M-H; 15->55V
   Spermidine-dihydroxyferuloyl-sinapyl
ATH08n12872 LinkIcon PM018086 LinkIcon 0.996
Spermidine-dihydroxyferuloyl-sinapyl; MS2; Q-TOF; M-H; 15->55V
   Spermidine-dihydroxyferuloyl-sinapyl
ATH07n10689 LinkIcon PM018086 LinkIcon 0.986
Spermidine-dihydroxyferuloyl-sinapyl; MS2; Q-TOF; M-H; 15->55V
   Spermidine-dihydroxyferuloyl-sinapyl
ATH09n12836 LinkIcon PM018086 LinkIcon 0.961
Spermidine-dihydroxyferuloyl-sinapyl; MS2; Q-TOF; M-H; 15->55V
   Spermidine-dihydroxyferuloyl-sinapyl
ATH11n07919 LinkIcon PM018086 LinkIcon 0.957
Spermidine-dihydroxyferuloyl-sinapyl; MS2; Q-TOF; M-H; 15->55V
   Spermidine-dihydroxyferuloyl-sinapyl
ATH58n15363 LinkIcon PM018086 LinkIcon 0.914
Spermidine-dihydroxyferuloyl-sinapyl; MS2; Q-TOF; M-H; 15->55V
   Spermidine-dihydroxyferuloyl-sinapyl
ATH56n14984 LinkIcon PM018086 LinkIcon 0.902
Spermidine-dihydroxyferuloyl-sinapyl; MS2; Q-TOF; M-H; 15->55V
   Spermidine-dihydroxyferuloyl-sinapyl
ATH09n13238 LinkIcon - -
-
ATH56n14981 LinkIcon - -
-
ATH57n15637 LinkIcon - -
-
ATH58n15360 LinkIcon - -
-
ATH60n14805 LinkIcon - -
-
ATH61n14198 LinkIcon - -
-
ATH62n14142 LinkIcon - -
-
ATH63n14570 LinkIcon - -
-
2 adn079447 LinkIcon Negative ATH08n14437 LinkIcon PM018083 LinkIcon 1.000
Spermidine-caffeoyl-dihydroxyferuloyl-sinapyl; MS2; Q-TOF; M-H; 15->55V
   Spermidine-caffeoyl-dihydroxyferuloyl-sinapyl
ATH08n14441 LinkIcon PM018083 LinkIcon 0.980
Spermidine-caffeoyl-dihydroxyferuloyl-sinapyl; MS2; Q-TOF; M-H; 15->55V
   Spermidine-caffeoyl-dihydroxyferuloyl-sinapyl
ATH06n11471 LinkIcon - -
-
ATH07n12557 LinkIcon - -
-
ATH14n13146 LinkIcon - -
-
ATH56n17053 LinkIcon - -
-
ATH56n17056 LinkIcon - -
-
ATH57n17932 LinkIcon - -
-
ATH58n17592 LinkIcon - -
-
ATH58n17595 LinkIcon - -
-
ATH59n17356 LinkIcon - -
-
ATH60n17568 LinkIcon - -
-
ATH61n16466 LinkIcon - -
-
3 adn122105 LinkIcon Negative ATH56n19144 LinkIcon - -
-
ATH58n19711 LinkIcon - -
-
4 adp025561 LinkIcon Positive ATH09p09489 LinkIcon PT112530 LinkIcon 0.956
Calciferol; MS2; Q-Tof; [M+H]+
   Calciferol
  Vitamin D2
  Ergocalciferol
  Viosterin
  Osteil
  Viosterol
  Ercalciol
  Irradiated ergosterol
  Condacaps
  Condocaps
  Condol
  Crtron
  Crystallina
  Daral
  (5Z,7E,22E)-(3S)-9,10-Secoergosta-5,7,10(19),22-tetraen-3-ol
  Davitin
  Deltalin
  Deratol
  Diactol
  Drisdol
  Ergorone
  Ertron
  Fortodyl
  Geltabs
  Hyperkil
  Irradiated ergosta-5,7,22-trien-3-beta-ol
  Metadee
PT112580 LinkIcon 0.948
delta-Tocotrienol; MS2; Q-Tof; [M+H]+
   delta-Tocotrienol
  8-Methyltocotrienol
  (R)-delta-Tocotrienol
  (2R)-2,8-dimethyl-2-[(3E,7E)-4,8,12-trimethyltrideca-3,7,11-trienyl]chroman-6-ol
ATH07p08926 LinkIcon PT112580 LinkIcon 0.926
delta-Tocotrienol; MS2; Q-Tof; [M+H]+
   delta-Tocotrienol
  8-Methyltocotrienol
  (R)-delta-Tocotrienol
  (2R)-2,8-dimethyl-2-[(3E,7E)-4,8,12-trimethyltrideca-3,7,11-trienyl]chroman-6-ol
PT112530 LinkIcon 0.909
Calciferol; MS2; Q-Tof; [M+H]+
   Calciferol
  Vitamin D2
  Ergocalciferol
  Viosterin
  Osteil
  Viosterol
  Ercalciol
  Irradiated ergosterol
  Condacaps
  Condocaps
  Condol
  Crtron
  Crystallina
  Daral
  (5Z,7E,22E)-(3S)-9,10-Secoergosta-5,7,10(19),22-tetraen-3-ol
  Davitin
  Deltalin
  Deratol
  Diactol
  Drisdol
  Ergorone
  Ertron
  Fortodyl
  Geltabs
  Hyperkil
  Irradiated ergosta-5,7,22-trien-3-beta-ol
  Metadee
ATH06p09954 LinkIcon - -
-
ATH06p10048 LinkIcon - -
-
ATH06p10165 LinkIcon - -
-
ATH06p10168 LinkIcon - -
-
ATH08p10186 LinkIcon - -
-
ATH08p10418 LinkIcon - -
-
ATH08p10599 LinkIcon - -
-
ATH08p10602 LinkIcon - -
-
ATH08p10891 LinkIcon - -
-
ATH56p10827 LinkIcon - -
-
ATH56p11098 LinkIcon - -
-
ATH56p11612 LinkIcon - -
-
ATH56p11615 LinkIcon - -
-
ATH56p11883 LinkIcon - -
-
ATH56p12130 LinkIcon - -
-
ATH57p10656 LinkIcon - -
-
ATH58p12251 LinkIcon - -
-
ATH58p12254 LinkIcon - -
-
ATH58p12872 LinkIcon - -
-
ATH58p12875 LinkIcon - -
-
ATH62p10230 LinkIcon - -
-
5 adp029987 LinkIcon Positive ATH06p11055 LinkIcon PM018175 LinkIcon 0.922
Spermidine-dihydroxyferuloyl-sinapyl; MS2; Q-TOF; M+H; 15->55V
   Spermidine-dihydroxyferuloyl-sinapyl
ATH06p11052 LinkIcon - -
-
ATH08p11492 LinkIcon - -
-
ATH08p11713 LinkIcon - -
-
ATH10p09353 LinkIcon - -
-
ATH56p13152 LinkIcon - -
-
ATH56p13418 LinkIcon - -
-
ATH58p14561 LinkIcon - -
-
ATH63p15737 LinkIcon - -
-
6 adp038670 LinkIcon Positive ATH06p12200 LinkIcon PM018170 LinkIcon 0.917
Spermidine-caffeoyl-dihydroxyferuloyl-sinapyl; MS2; Q-TOF; M+H; 15->55V
   Spermidine-caffeoyl-dihydroxyferuloyl-sinapyl
ATH56p15150 LinkIcon PT112580 LinkIcon 0.900
delta-Tocotrienol; MS2; Q-Tof; [M+H]+
   delta-Tocotrienol
  8-Methyltocotrienol
  (R)-delta-Tocotrienol
  (2R)-2,8-dimethyl-2-[(3E,7E)-4,8,12-trimethyltrideca-3,7,11-trienyl]chroman-6-ol
ATH13p14823 LinkIcon - -
-
ATH56p15148 LinkIcon - -
-
ATH56p15387 LinkIcon - -
-
ATH58p15812 LinkIcon - -
-
ATH61p16485 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g69940
Pectin lyase-like superfamily protein Encodes a protein with pectin methylesterase activity. The protein expression was shown to be highly restricted to the pollen grain (no detection in any other tissues or in the pollen grains' surrounding cells of the anthers. PPME1; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: pollen tube growth; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G07410.1); Has 2422 Blast hits to 2374 proteins in 311 species: Archae - 6; Bacteria - 595; Metazoa - 1; Fungi - 194; Plants - 1601; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
2
at3g62170
VANGUARD 1 homolog 2 - VANGUARD 1 homolog 2 (VGDH2); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G47040.1); Has 2977 Blast hits to 2910 proteins in 463 species: Archae - 6; Bacteria - 876; Metazoa - 1; Fungi - 201; Plants - 1867; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
3
at5g07410
Pectin lyase-like superfamily protein - Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G69940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

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RIKEN Center for Sustainable Resource Science
Integrated Genome Informatics Research Unit