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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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AGI locus IDs

Choosing cell X:" 25 " Y:" 22 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn021963 LinkIcon Negative ATH06n01967 LinkIcon PM008029 LinkIcon 0.938
Sinapoyl choline dehydro dimer-isomer; MS2; QIT; M+Na; 15->55V
   Sinapoyl choline dehydro dimer-isomer
ATH07n02190 LinkIcon - -
-
ATH07n02228 LinkIcon - -
-
ATH09n03288 LinkIcon - -
-
ATH09n04232 LinkIcon - -
-
ATH10n01697 LinkIcon - -
-
ATH10n02480 LinkIcon - -
-
ATH13n03169 LinkIcon - -
-
ATH13n03554 LinkIcon - -
-
ATH56n04064 LinkIcon - -
-
ATH57n04301 LinkIcon - -
-
ATH57n04814 LinkIcon - -
-
ATH58n04834 LinkIcon - -
-
ATH59n03718 LinkIcon - -
-
ATH59n04484 LinkIcon - -
-
ATH60n04712 LinkIcon - -
-
ATH61n03955 LinkIcon - -
-
ATH61n04567 LinkIcon - -
-
ATH62n03508 LinkIcon - -
-
ATH62n03511 LinkIcon - -
-
ATH62n04711 LinkIcon - -
-
2 adn024924 LinkIcon Negative ATH14n05022 LinkIcon PS044607 LinkIcon 0.928
Caffeic acid; MS2; QqQ; negative; CE 10 V
   Caffeic acid
  trans-Caffeate
  3,4-Dihydroxycinnamic acid
  3,4-Dihydroxybenzeneacrylic acid
  3-(3,4-Dihydroxyphenyl)propenoic acid
PM003718 LinkIcon 0.923
Caffeic acid O-glucoside; MS2; QIT; M-H; 100%
   Caffeic acid O-glucoside
  Caffeic acid hexoside
ATH14n04353 LinkIcon PM004313 LinkIcon 0.918
Caffeic acid hexoside ; MS2; QIT; M-H; n.d.
   Caffeic acid hexoside
ATH14n05022 LinkIcon PS017707 LinkIcon 0.918
Caffeic acid; MS2; QqQ; negative; CE 10 V
   Caffeic acid
  trans-Caffeate
  3,4-Dihydroxycinnamic acid
  3,4-Dihydroxybenzeneacrylic acid
  3-(3,4-Dihydroxyphenyl)propenoic acid
PT209850 LinkIcon 0.917
1,3-Dihydroxyacetone dimer(DHA); MS2; Q-Tof; [M-H]-
   1,3-Dihydroxyacetone dimer
  2,5-Dihydroxydioxane-2,5-dimethanol
  2,5-bis(hydroxymethyl)-1,4-dioxane-2,5-diol
ATH14n04353 LinkIcon PM003718 LinkIcon 0.914
Caffeic acid O-glucoside; MS2; QIT; M-H; 100%
   Caffeic acid O-glucoside
ATH08n04706 LinkIcon PS054808 LinkIcon 0.913
Maltotriose; MS2; QqQ; negative; CE 20 V
   Maltotriose
  Amylotriose
  alpha-1,4-Glucotriose
  Triomaltose
  O-alpha-D-glucopyranosyl-O-alpha-D-glucopyranosyl-D-glucose
  (Glc(alpha1-4)Glc(alpha1-4)Glc)
PS045210 LinkIcon 0.912
rosmarinic acid; MS2; QqQ; negative; CE 40 V
   rosmarinic acid
  7-Hydroxy-PIPAT
  Rosmarinate
  Rosemary acid
  (R)-O-(3,4-Dihydroxycinnamoyl)-3-(3,4- dihydroxyphenyl)lactic acid
ATH14n04353 LinkIcon PS044607 LinkIcon 0.907
Caffeic acid; MS2; QqQ; negative; CE 10 V
   Caffeic acid
  trans-Caffeate
  3,4-Dihydroxycinnamic acid
  3,4-Dihydroxybenzeneacrylic acid
  3-(3,4-Dihydroxyphenyl)propenoic acid
ATH13n04967 LinkIcon PS119108 LinkIcon 0.904
Galactinol Dihydrate; MS2; QqQ; negative; CE 20 V
   Galactinol Dihydrate
  Gla+myo-inositol
  6beta-Galactinol
  1-O-alpha-D-Galactosyl-D-myo-inositol
ATH58n06431 LinkIcon PS054808 LinkIcon 0.903
Maltotriose; MS2; QqQ; negative; CE 20 V
   Maltotriose
  Amylotriose
  alpha-1,4-Glucotriose
  Triomaltose
  O-alpha-D-glucopyranosyl-O-alpha-D-glucopyranosyl-D-glucose
  (Glc(alpha1-4)Glc(alpha1-4)Glc)
ATH14n04350 LinkIcon PS045210 LinkIcon 0.902
rosmarinic acid; MS2; QqQ; negative; CE 40 V
   rosmarinic acid
  7-Hydroxy-PIPAT
  Rosmarinate
  Rosemary acid
  (R)-O-(3,4-Dihydroxycinnamoyl)-3-(3,4- dihydroxyphenyl)lactic acid
ATH56n06093 LinkIcon PS054808 LinkIcon 0.901
Maltotriose; MS2; QqQ; negative; CE 20 V
   Maltotriose
  Amylotriose
  alpha-1,4-Glucotriose
  Triomaltose
  O-alpha-D-glucopyranosyl-O-alpha-D-glucopyranosyl-D-glucose
  (Glc(alpha1-4)Glc(alpha1-4)Glc)
ATH06n02372 LinkIcon - -
-
ATH08n05352 LinkIcon - -
-
ATH09n04972 LinkIcon - -
-
ATH10n03040 LinkIcon - -
-
ATH11n02310 LinkIcon - -
-
ATH11n02766 LinkIcon - -
-
ATH13n03946 LinkIcon - -
-
ATH14n04623 LinkIcon - -
-
ATH56n05607 LinkIcon - -
-
ATH57n05866 LinkIcon - -
-
ATH57n06627 LinkIcon - -
-
ATH58n05654 LinkIcon - -
-
ATH59n05546 LinkIcon - -
-
ATH59n06303 LinkIcon - -
-
ATH60n05761 LinkIcon - -
-
ATH61n04758 LinkIcon - -
-
ATH61n05045 LinkIcon - -
-
ATH62n04957 LinkIcon - -
-
ATH63n05212 LinkIcon - -
-
ATH64n05078 LinkIcon - -
-
ATH64n06092 LinkIcon - -
-
3 adn045741 LinkIcon Negative ATH06n06734 LinkIcon - -
-
ATH06n07085 LinkIcon - -
-
ATH07n07739 LinkIcon - -
-
ATH08n09736 LinkIcon - -
-
ATH08n10628 LinkIcon - -
-
ATH11n06303 LinkIcon - -
-
ATH11n06306 LinkIcon - -
-
ATH12n05806 LinkIcon - -
-
ATH13n09900 LinkIcon - -
-
ATH13n10121 LinkIcon - -
-
ATH56n11603 LinkIcon - -
-
ATH56n12570 LinkIcon - -
-
ATH56n12574 LinkIcon - -
-
ATH58n11501 LinkIcon - -
-
ATH58n12523 LinkIcon - -
-
ATH58n12777 LinkIcon - -
-
ATH59n11389 LinkIcon - -
-
ATH59n12379 LinkIcon - -
-
ATH61n10200 LinkIcon - -
-
ATH61n10204 LinkIcon - -
-
ATH61n11420 LinkIcon - -
-
ATH62n10511 LinkIcon - -
-
ATH62n10513 LinkIcon - -
-
ATH62n10768 LinkIcon - -
-
ATH62n11699 LinkIcon - -
-
ATH63n10667 LinkIcon - -
-
4 adp007018 LinkIcon Positive ATH07p04357 LinkIcon - -
-
ATH09p04442 LinkIcon - -
-
ATH14p04451 LinkIcon - -
-
ATH14p05130 LinkIcon - -
-
5 adp017969 LinkIcon Positive ATH14p08104 LinkIcon - -
-
ATH14p08458 LinkIcon - -
-
ATH14p08624 LinkIcon - -
-
ATH14p08627 LinkIcon - -
-
ATH64p09658 LinkIcon - -
-
ATH64p09885 LinkIcon - -
-
ATH64p10386 LinkIcon - -
-
6 adp027042 LinkIcon Positive ATH09p10300 LinkIcon PT112530 LinkIcon 0.967
Calciferol; MS2; Q-Tof; [M+H]+
   Calciferol
  Vitamin D2
  Ergocalciferol
  Viosterin
  Osteil
  Viosterol
  Ercalciol
  Irradiated ergosterol
  Condacaps
  Condocaps
  Condol
  Crtron
  Crystallina
  Daral
  (5Z,7E,22E)-(3S)-9,10-Secoergosta-5,7,10(19),22-tetraen-3-ol
  Davitin
  Deltalin
  Deratol
  Diactol
  Drisdol
  Ergorone
  Ertron
  Fortodyl
  Geltabs
  Hyperkil
  Irradiated ergosta-5,7,22-trien-3-beta-ol
  Metadee
PT112580 LinkIcon 0.955
delta-Tocotrienol; MS2; Q-Tof; [M+H]+
   delta-Tocotrienol
  8-Methyltocotrienol
  (R)-delta-Tocotrienol
  (2R)-2,8-dimethyl-2-[(3E,7E)-4,8,12-trimethyltrideca-3,7,11-trienyl]chroman-6-ol
ATH57p11685 LinkIcon - -
-
ATH63p11973 LinkIcon - -
-
ATH63p12200 LinkIcon - -
-
7 adp029853 LinkIcon Positive ATH06p11336 LinkIcon - -
-
ATH08p11418 LinkIcon - -
-
ATH11p10655 LinkIcon - -
-
ATH57p12377 LinkIcon - -
-
ATH58p14079 LinkIcon - -
-
ATH58p14341 LinkIcon - -
-
ATH61p15081 LinkIcon - -
-
ATH62p12658 LinkIcon - -
-
8 adp030483 LinkIcon Positive ATH06p11235 LinkIcon - -
-
ATH08p11417 LinkIcon - -
-
ATH11p10972 LinkIcon - -
-
ATH12p09984 LinkIcon - -
-
ATH56p13076 LinkIcon - -
-
ATH58p14494 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g15460
HCO3- transporter family Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions. REQUIRES HIGH BORON 4 (BOR4); CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT1G74810.1); Has 2623 Blast hits to 1400 proteins in 194 species: Archae - 0; Bacteria - 4; Metazoa - 1965; Fungi - 314; Plants - 231; Viruses - 2; Other Eukaryotes - 107 (source: NCBI BLink).
2
at1g32780
GroES-like zinc-binding dehydrogenase family protein - GroES-like zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT1G64710.1); Has 32235 Blast hits to 32213 proteins in 3118 species: Archae - 738; Bacteria - 20422; Metazoa - 1293; Fungi - 2369; Plants - 4116; Viruses - 3; Other Eukaryotes - 3294 (source: NCBI BLink).
3
at1g75890
GDSL-like Lipase/Acylhydrolase superfamily protein - GDSL-like Lipase/Acylhydrolase superfamily protein; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT1G75880.1); Has 3501 Blast hits to 3459 proteins in 216 species: Archae - 0; Bacteria - 317; Metazoa - 0; Fungi - 19; Plants - 3145; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
4
at2g27120
DNA polymerase epsilon catalytic subunit Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1. TILTED 2 (TIL2); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA replication; EXPRESSED IN: leaf whorl, sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), Domain of unknown function DUF1744 (InterPro:IPR013697), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: DNA polymerase epsilon catalytic subunit (TAIR:AT1G08260.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
5
at3g03450
RGA-like 2 Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development. RGA-like 2 (RGL2); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: RGA-like protein 3 (TAIR:AT5G17490.1); Has 2697 Blast hits to 2637 proteins in 314 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2690; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
6
at3g03910
glutamate dehydrogenase 3 GDH3 encodes a member of the glutamate dehydrogenease family. Its expression is upregulated in response to cytokinin and it may play a role in the control of nitrogen metabolism in leaf development. glutamate dehydrogenase 3 (GDH3); FUNCTIONS IN: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor, oxidoreductase activity, binding, catalytic activity; INVOLVED IN: regulation of nitrogen compound metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glutamate/phenylalanine/leucine/valine dehydrogenase (InterPro:IPR006095), Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal (InterPro:IPR006096), Glutamate dehydrogenase (InterPro:IPR014362), NAD(P)-binding domain (InterPro:IPR016040), Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain (InterPro:IPR006097); BEST Arabidopsis thaliana protein match is: glutamate dehydrogenase 1 (TAIR:AT5G18170.1); Has 8937 Blast hits to 8931 proteins in 2306 species: Archae - 305; Bacteria - 5351; Metazoa - 356; Fungi - 208; Plants - 399; Viruses - 0; Other Eukaryotes - 2318 (source: NCBI BLink).
7
at4g13210
Pectin lyase-like superfamily protein - Pectin lyase-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G24670.1); Has 1682 Blast hits to 1675 proteins in 267 species: Archae - 0; Bacteria - 739; Metazoa - 0; Fungi - 216; Plants - 719; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
8
at5g56970
cytokinin oxidase 3 It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. cytokinin oxidase 3 (CKX3); FUNCTIONS IN: primary amine oxidase activity, cytokinin dehydrogenase activity; INVOLVED IN: cytokinin catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase 4 (TAIR:AT4G29740.2); Has 7950 Blast hits to 7944 proteins in 1387 species: Archae - 176; Bacteria - 4485; Metazoa - 150; Fungi - 1601; Plants - 789; Viruses - 0; Other Eukaryotes - 749 (source: NCBI BLink).
9
at5g57240
OSBP(oxysterol binding protein)-related protein 4C - OSBP(oxysterol binding protein)-related protein 4C (ORP4C); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein, conserved site (InterPro:IPR018494), Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.1); Has 2168 Blast hits to 2165 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 1089; Fungi - 634; Plants - 225; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).

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