Home Gene search Metabolite search PRIMe
 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
 Highlight filters
Keyword
AGI locus IDs

Choosing cell X:" 27 " Y:" 21 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adp000727 LinkIcon Positive ATH11p00312 LinkIcon PM018203 LinkIcon 0.996
Tyramine; MS2; Q-TOF; M+H; 15->55V
   Tyramine
PT103640 LinkIcon 0.985
Tyramine; MS2; Q-Tof; [M+H]+
   Tyramine
  4-Hydroxyphenethylamine
  Uteramine
  4-Hydroxy-beta-phenylethylamine
  2-(4-Hydroxyphenyl)ethylamine
  4-(2-Aminoethyl)phenol
  Systogene
  Tyrosamine
  4-(2-aminoethyl)phenol
ATH12p00566 LinkIcon PM018203 LinkIcon 0.984
Tyramine; MS2; Q-TOF; M+H; 15->55V
   Tyramine
PT103640 LinkIcon 0.982
Tyramine; MS2; Q-Tof; [M+H]+
   Tyramine
  4-Hydroxyphenethylamine
  Uteramine
  4-Hydroxy-beta-phenylethylamine
  2-(4-Hydroxyphenyl)ethylamine
  4-(2-Aminoethyl)phenol
  Systogene
  Tyrosamine
  4-(2-aminoethyl)phenol
ATH06p00308 LinkIcon PM018203 LinkIcon 0.981
Tyramine; MS2; Q-TOF; M+H; 15->55V
   Tyramine
ATH08p00572 LinkIcon PM018203 LinkIcon 0.976
Tyramine; MS2; Q-TOF; M+H; 15->55V
   Tyramine
ATH61p01905 LinkIcon PM018203 LinkIcon 0.966
Tyramine; MS2; Q-TOF; M+H; 15->55V
   Tyramine
ATH56p00312 LinkIcon PM018203 LinkIcon 0.964
Tyramine; MS2; Q-TOF; M+H; 15->55V
   Tyramine
ATH06p00308 LinkIcon PT103640 LinkIcon 0.963
Tyramine; MS2; Q-Tof; [M+H]+
   Tyramine
  4-Hydroxyphenethylamine
  Uteramine
  4-Hydroxy-beta-phenylethylamine
  2-(4-Hydroxyphenyl)ethylamine
  4-(2-Aminoethyl)phenol
  Systogene
  Tyrosamine
  4-(2-aminoethyl)phenol
ATH61p01905 LinkIcon PS036403 LinkIcon 0.960
Tyramine; MS2; QqQ; positive; CE 30 V
   Tyramine
  4-Hydroxyphenethylamine
  Uteramine
  4-Hydroxy-beta-phenylethylamine
  2-(4-Hydroxyphenyl)ethylamine
  4-(2-Aminoethyl)phenol
  Systogene
  Tyrosamine
ATH08p00572 LinkIcon PS036403 LinkIcon 0.956
Tyramine; MS2; QqQ; positive; CE 30 V
   Tyramine
  4-Hydroxyphenethylamine
  Uteramine
  4-Hydroxy-beta-phenylethylamine
  2-(4-Hydroxyphenyl)ethylamine
  4-(2-Aminoethyl)phenol
  Systogene
  Tyrosamine
ATH06p00308 LinkIcon PS036403 LinkIcon 0.954
Tyramine; MS2; QqQ; positive; CE 30 V
   Tyramine
  4-Hydroxyphenethylamine
  Uteramine
  4-Hydroxy-beta-phenylethylamine
  2-(4-Hydroxyphenyl)ethylamine
  4-(2-Aminoethyl)phenol
  Systogene
  Tyrosamine
ATH08p00572 LinkIcon PT103640 LinkIcon 0.954
Tyramine; MS2; Q-Tof; [M+H]+
   Tyramine
  4-Hydroxyphenethylamine
  Uteramine
  4-Hydroxy-beta-phenylethylamine
  2-(4-Hydroxyphenyl)ethylamine
  4-(2-Aminoethyl)phenol
  Systogene
  Tyrosamine
  4-(2-aminoethyl)phenol
ATH56p00312 LinkIcon PS036403 LinkIcon 0.954
Tyramine; MS2; QqQ; positive; CE 30 V
   Tyramine
  4-Hydroxyphenethylamine
  Uteramine
  4-Hydroxy-beta-phenylethylamine
  2-(4-Hydroxyphenyl)ethylamine
  4-(2-Aminoethyl)phenol
  Systogene
  Tyrosamine
ATH58p00038 LinkIcon PS036403 LinkIcon 0.953
Tyramine; MS2; QqQ; positive; CE 30 V
   Tyramine
  4-Hydroxyphenethylamine
  Uteramine
  4-Hydroxy-beta-phenylethylamine
  2-(4-Hydroxyphenyl)ethylamine
  4-(2-Aminoethyl)phenol
  Systogene
  Tyrosamine
PM018203 LinkIcon 0.946
Tyramine; MS2; Q-TOF; M+H; 15->55V
   Tyramine
ATH11p00312 LinkIcon PS036403 LinkIcon 0.943
Tyramine; MS2; QqQ; positive; CE 30 V
   Tyramine
  4-Hydroxyphenethylamine
  Uteramine
  4-Hydroxy-beta-phenylethylamine
  2-(4-Hydroxyphenyl)ethylamine
  4-(2-Aminoethyl)phenol
  Systogene
  Tyrosamine
ATH61p01905 LinkIcon PT103640 LinkIcon 0.943
Tyramine; MS2; Q-Tof; [M+H]+
   Tyramine
  4-Hydroxyphenethylamine
  Uteramine
  4-Hydroxy-beta-phenylethylamine
  2-(4-Hydroxyphenyl)ethylamine
  4-(2-Aminoethyl)phenol
  Systogene
  Tyrosamine
  4-(2-aminoethyl)phenol
ATH56p00312 LinkIcon PT103640 LinkIcon 0.939
Tyramine; MS2; Q-Tof; [M+H]+
   Tyramine
  4-Hydroxyphenethylamine
  Uteramine
  4-Hydroxy-beta-phenylethylamine
  2-(4-Hydroxyphenyl)ethylamine
  4-(2-Aminoethyl)phenol
  Systogene
  Tyrosamine
  4-(2-aminoethyl)phenol
ATH12p00566 LinkIcon PS036403 LinkIcon 0.923
Tyramine; MS2; QqQ; positive; CE 30 V
   Tyramine
  4-Hydroxyphenethylamine
  Uteramine
  4-Hydroxy-beta-phenylethylamine
  2-(4-Hydroxyphenyl)ethylamine
  4-(2-Aminoethyl)phenol
  Systogene
  Tyrosamine
ATH58p00038 LinkIcon PT103640 LinkIcon 0.917
Tyramine; MS2; Q-Tof; [M+H]+
   Tyramine
  4-Hydroxyphenethylamine
  Uteramine
  4-Hydroxy-beta-phenylethylamine
  2-(4-Hydroxyphenyl)ethylamine
  4-(2-Aminoethyl)phenol
  Systogene
  Tyrosamine
  4-(2-aminoethyl)phenol
ATH57p00580 LinkIcon - -
-
ATH59p00582 LinkIcon - -
-
ATH62p00315 LinkIcon - -
-
2 adp009975 LinkIcon Positive ATH12p04961 LinkIcon PS124002 LinkIcon 0.982
Sodium Deoxycholate; MS2; QqQ; positive; CE 20 V
   Sodium Deoxycholate
  Deoxycholic Acid
  desoxycholate
  3alpha,12alpha-Dihydroxy-5beta-cholanic acid
  3alpha,12alpha-Dihydroxy-5beta-cholanate
PM012220 LinkIcon 0.953
Fibleucin; MS2; QIT; M+H; 25V
   Fibleucin
PS124001 LinkIcon 0.938
Sodium Deoxycholate; MS2; QqQ; positive; CE 10 V
   Sodium Deoxycholate
  Deoxycholic Acid
  desoxycholate
  3alpha,12alpha-Dihydroxy-5beta-cholanic acid
  3alpha,12alpha-Dihydroxy-5beta-cholanate
ATH14p06095 LinkIcon PS071901 LinkIcon 0.929
L-(+)-Lysine; MS2; QqQ; positive; CE 10 V
   L-(+)-Lysine
  Lys
  Lysine acid
  2,6-diaminohexanoic acid
PS027301 LinkIcon 0.928
L-Glutamine; MS2; QqQ; positive; CE 10 V
   L-Glutamine
  Q
  Gln
  L-Glutamic acid 5-amide
  (S)-2,5-Diamino-5-oxopentanoic acid
  L-2-Aminoglutaramic acid
  Levoglutamide
  Cebrogen
  Glumin
PS028101 LinkIcon 0.924
L-Lysine monohydrochloride; MS2; QqQ; positive; CE 10 V
   L-Lysine monohydrochloride
  Lys
  (S)-2,6-Diaminohexanoic acid monohydrochloride
  Lysine acid
ATH14p06266 LinkIcon PS071901 LinkIcon 0.920
L-(+)-Lysine; MS2; QqQ; positive; CE 10 V
   L-(+)-Lysine
  Lys
  Lysine acid
  2,6-diaminohexanoic acid
PS028101 LinkIcon 0.913
L-Lysine monohydrochloride; MS2; QqQ; positive; CE 10 V
   L-Lysine monohydrochloride
  Lys
  (S)-2,6-Diaminohexanoic acid monohydrochloride
  Lysine acid
PS027301 LinkIcon 0.910
L-Glutamine; MS2; QqQ; positive; CE 10 V
   L-Glutamine
  Q
  Gln
  L-Glutamic acid 5-amide
  (S)-2,5-Diamino-5-oxopentanoic acid
  L-2-Aminoglutaramic acid
  Levoglutamide
  Cebrogen
  Glumin
ATH06p04645 LinkIcon - -
-
ATH06p04648 LinkIcon - -
-
ATH06p05224 LinkIcon - -
-
ATH07p04500 LinkIcon - -
-
ATH08p04691 LinkIcon - -
-
ATH08p05290 LinkIcon - -
-
ATH08p05603 LinkIcon - -
-
ATH09p05125 LinkIcon - -
-
ATH10p04501 LinkIcon - -
-
ATH11p04682 LinkIcon - -
-
ATH11p05221 LinkIcon - -
-
ATH12p05035 LinkIcon - -
-
ATH13p05838 LinkIcon - -
-
ATH13p06063 LinkIcon - -
-
ATH14p05267 LinkIcon - -
-
ATH14p05270 LinkIcon - -
-
ATH56p04634 LinkIcon - -
-
ATH56p04637 LinkIcon - -
-
ATH56p05135 LinkIcon - -
-
ATH57p04513 LinkIcon - -
-
ATH58p05090 LinkIcon - -
-
ATH58p05093 LinkIcon - -
-
ATH58p06067 LinkIcon - -
-
ATH58p06070 LinkIcon - -
-
ATH61p06211 LinkIcon - -
-
ATH61p06717 LinkIcon - -
-
ATH62p04497 LinkIcon - -
-
ATH62p05341 LinkIcon - -
-
ATH63p05089 LinkIcon - -
-
ATH63p05592 LinkIcon - -
-
ATH63p06381 LinkIcon - -
-
ATH64p05547 LinkIcon - -
-
ATH64p06815 LinkIcon - -
-
ATH64p06818 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g49430
long-chain acyl-CoA synthetase 2 Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation. long-chain acyl-CoA synthetase 2 (LACS2); CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G64400.1); Has 53337 Blast hits to 50359 proteins in 3209 species: Archae - 917; Bacteria - 34261; Metazoa - 2388; Fungi - 2032; Plants - 1855; Viruses - 1; Other Eukaryotes - 11883 (source: NCBI BLink).
2
at1g72970
Glucose-methanol-choline (GMC) oxidoreductase family protein Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect. HOTHEAD (HTH); CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G12570.1); Has 10392 Blast hits to 10274 proteins in 1087 species: Archae - 4; Bacteria - 3747; Metazoa - 796; Fungi - 1463; Plants - 312; Viruses - 12; Other Eukaryotes - 4058 (source: NCBI BLink).
3
at3g04290
Li-tolerant lipase 1 - Li-tolerant lipase 1 (LTL1); FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT5G33370.1); Has 3364 Blast hits to 3325 proteins in 174 species: Archae - 0; Bacteria - 234; Metazoa - 0; Fungi - 3; Plants - 3111; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
4
at3g28500
60S acidic ribosomal protein family - 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G40040.1); Has 1217 Blast hits to 1216 proteins in 338 species: Archae - 72; Bacteria - 1; Metazoa - 371; Fungi - 279; Plants - 263; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).
5
at3g50890
homeobox protein 28 - homeobox protein 28 (HB28); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 24 (TAIR:AT2G18350.1); Has 497 Blast hits to 471 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 497; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
6
at5g45670
GDSL-like Lipase/Acylhydrolase superfamily protein - GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT4G18970.1); Has 3607 Blast hits to 3571 proteins in 263 species: Archae - 0; Bacteria - 416; Metazoa - 0; Fungi - 74; Plants - 3097; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
7
at5g47500
Pectin lyase-like superfamily protein - Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G19730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
8
at5g51750
subtilase 1.3 - subtilase 1.3 (SBT1.3); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT5G67360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

Creative Commons License
RIKEN Center for Sustainable Resource Science
Integrated Genome Informatics Research Unit