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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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AGI locus IDs

Choosing cell X:" 28 " Y:" 10 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn086026 LinkIcon Negative ATH13n14833 LinkIcon PS107507 LinkIcon 0.975
4-(Methylsulfinyl)butylglucosinolate; MS2; QqQ; negative; CE 10 V
   4-(Methylsulfinyl)butylglucosinolate
  4MSOB
  glucoraphanin
  4-methylsulfinylbutyl glucosinolate
ATH12n07935 LinkIcon PS107507 LinkIcon 0.974
4-(Methylsulfinyl)butylglucosinolate; MS2; QqQ; negative; CE 10 V
   4-(Methylsulfinyl)butylglucosinolate
  4MSOB
  glucoraphanin
  4-methylsulfinylbutyl glucosinolate
ATH13n14833 LinkIcon PS050908 LinkIcon 0.964
4-methylsulfinylbutyl glucosinolate; MS2; QqQ; negative; CE 20 V
   4-methylsulfinylbutyl glucosinolate
  4MSOB
  glucoraphanin
  4-(Methylsulfinyl)butylglucosinolate
ATH12n07935 LinkIcon PS050908 LinkIcon 0.961
4-methylsulfinylbutyl glucosinolate; MS2; QqQ; negative; CE 20 V
   4-methylsulfinylbutyl glucosinolate
  4MSOB
  glucoraphanin
  4-(Methylsulfinyl)butylglucosinolate
ATH13n14833 LinkIcon PS050907 LinkIcon 0.958
4-methylsulfinylbutyl glucosinolate; MS2; QqQ; negative; CE 10 V
   4-methylsulfinylbutyl glucosinolate
  4MSOB
  glucoraphanin
  4-(Methylsulfinyl)butylglucosinolate
ATH12n07935 LinkIcon PS050907 LinkIcon 0.957
4-methylsulfinylbutyl glucosinolate; MS2; QqQ; negative; CE 10 V
   4-methylsulfinylbutyl glucosinolate
  4MSOB
  glucoraphanin
  4-(Methylsulfinyl)butylglucosinolate
ATH63n17454 LinkIcon PS107507 LinkIcon 0.955
4-(Methylsulfinyl)butylglucosinolate; MS2; QqQ; negative; CE 10 V
   4-(Methylsulfinyl)butylglucosinolate
  4MSOB
  glucoraphanin
  4-methylsulfinylbutyl glucosinolate
ATH62n16818 LinkIcon PS107507 LinkIcon 0.950
4-(Methylsulfinyl)butylglucosinolate; MS2; QqQ; negative; CE 10 V
   4-(Methylsulfinyl)butylglucosinolate
  4MSOB
  glucoraphanin
  4-methylsulfinylbutyl glucosinolate
ATH13n14836 LinkIcon PS107507 LinkIcon 0.946
4-(Methylsulfinyl)butylglucosinolate; MS2; QqQ; negative; CE 10 V
   4-(Methylsulfinyl)butylglucosinolate
  4MSOB
  glucoraphanin
  4-methylsulfinylbutyl glucosinolate
ATH63n17710 LinkIcon PS107507 LinkIcon 0.943
4-(Methylsulfinyl)butylglucosinolate; MS2; QqQ; negative; CE 10 V
   4-(Methylsulfinyl)butylglucosinolate
  4MSOB
  glucoraphanin
  4-methylsulfinylbutyl glucosinolate
ATH63n17454 LinkIcon PS050907 LinkIcon 0.939
4-methylsulfinylbutyl glucosinolate; MS2; QqQ; negative; CE 10 V
   4-methylsulfinylbutyl glucosinolate
  4MSOB
  glucoraphanin
  4-(Methylsulfinyl)butylglucosinolate
ATH13n14833 LinkIcon PS107508 LinkIcon 0.938
4-(Methylsulfinyl)butylglucosinolate; MS2; QqQ; negative; CE 20 V
   4-(Methylsulfinyl)butylglucosinolate
  4MSOB
  glucoraphanin
  4-methylsulfinylbutyl glucosinolate
ATH63n17454 LinkIcon PS050908 LinkIcon 0.938
4-methylsulfinylbutyl glucosinolate; MS2; QqQ; negative; CE 20 V
   4-methylsulfinylbutyl glucosinolate
  4MSOB
  glucoraphanin
  4-(Methylsulfinyl)butylglucosinolate
ATH12n07935 LinkIcon PS107508 LinkIcon 0.934
4-(Methylsulfinyl)butylglucosinolate; MS2; QqQ; negative; CE 20 V
   4-(Methylsulfinyl)butylglucosinolate
  4MSOB
  glucoraphanin
  4-methylsulfinylbutyl glucosinolate
ATH13n14836 LinkIcon PS050908 LinkIcon 0.934
4-methylsulfinylbutyl glucosinolate; MS2; QqQ; negative; CE 20 V
   4-methylsulfinylbutyl glucosinolate
  4MSOB
  glucoraphanin
  4-(Methylsulfinyl)butylglucosinolate
ATH62n16818 LinkIcon PS050907 LinkIcon 0.934
4-methylsulfinylbutyl glucosinolate; MS2; QqQ; negative; CE 10 V
   4-methylsulfinylbutyl glucosinolate
  4MSOB
  glucoraphanin
  4-(Methylsulfinyl)butylglucosinolate
PS050908 LinkIcon 0.933
4-methylsulfinylbutyl glucosinolate; MS2; QqQ; negative; CE 20 V
   4-methylsulfinylbutyl glucosinolate
  4MSOB
  glucoraphanin
  4-(Methylsulfinyl)butylglucosinolate
ATH13n14836 LinkIcon PS050907 LinkIcon 0.930
4-methylsulfinylbutyl glucosinolate; MS2; QqQ; negative; CE 10 V
   4-methylsulfinylbutyl glucosinolate
  4MSOB
  glucoraphanin
  4-(Methylsulfinyl)butylglucosinolate
ATH63n17710 LinkIcon PS050907 LinkIcon 0.928
4-methylsulfinylbutyl glucosinolate; MS2; QqQ; negative; CE 10 V
   4-methylsulfinylbutyl glucosinolate
  4MSOB
  glucoraphanin
  4-(Methylsulfinyl)butylglucosinolate
PS050908 LinkIcon 0.927
4-methylsulfinylbutyl glucosinolate; MS2; QqQ; negative; CE 20 V
   4-methylsulfinylbutyl glucosinolate
  4MSOB
  glucoraphanin
  4-(Methylsulfinyl)butylglucosinolate
ATH63n17454 LinkIcon PS107508 LinkIcon 0.911
4-(Methylsulfinyl)butylglucosinolate; MS2; QqQ; negative; CE 20 V
   4-(Methylsulfinyl)butylglucosinolate
  4MSOB
  glucoraphanin
  4-methylsulfinylbutyl glucosinolate
ATH13n14836 LinkIcon PS107508 LinkIcon 0.907
4-(Methylsulfinyl)butylglucosinolate; MS2; QqQ; negative; CE 20 V
   4-(Methylsulfinyl)butylglucosinolate
  4MSOB
  glucoraphanin
  4-methylsulfinylbutyl glucosinolate
ATH62n16818 LinkIcon PS107508 LinkIcon 0.906
4-(Methylsulfinyl)butylglucosinolate; MS2; QqQ; negative; CE 20 V
   4-(Methylsulfinyl)butylglucosinolate
  4MSOB
  glucoraphanin
  4-methylsulfinylbutyl glucosinolate
ATH63n17710 LinkIcon PS107508 LinkIcon 0.900
4-(Methylsulfinyl)butylglucosinolate; MS2; QqQ; negative; CE 20 V
   4-(Methylsulfinyl)butylglucosinolate
  4MSOB
  glucoraphanin
  4-methylsulfinylbutyl glucosinolate
ATH06n12097 LinkIcon - -
-
ATH07n13536 LinkIcon - -
-
ATH09n15198 LinkIcon - -
-
ATH56n17662 LinkIcon - -
-
ATH57n17848 LinkIcon - -
-
ATH57n18358 LinkIcon - -
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ATH58n18732 LinkIcon - -
-
ATH61n16383 LinkIcon - -
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ATH62n16609 LinkIcon - -
-
ATH62n16821 LinkIcon - -
-
2 adp019416 LinkIcon Positive ATH06p08085 LinkIcon - -
-
ATH06p08716 LinkIcon - -
-
ATH07p07225 LinkIcon - -
-
ATH07p07650 LinkIcon - -
-
ATH08p08101 LinkIcon - -
-
ATH08p08670 LinkIcon - -
-
ATH09p08089 LinkIcon - -
-
ATH10p07452 LinkIcon - -
-
ATH11p07792 LinkIcon - -
-
ATH11p08510 LinkIcon - -
-
ATH12p07371 LinkIcon - -
-
ATH12p07780 LinkIcon - -
-
ATH12p07783 LinkIcon - -
-
ATH13p09108 LinkIcon - -
-
ATH13p09746 LinkIcon - -
-
ATH13p09997 LinkIcon - -
-
ATH14p08564 LinkIcon - -
-
ATH14p08781 LinkIcon - -
-
ATH14p09068 LinkIcon - -
-
ATH14p09071 LinkIcon - -
-
ATH56p08143 LinkIcon - -
-
ATH56p08778 LinkIcon - -
-
ATH57p07710 LinkIcon - -
-
ATH57p07824 LinkIcon - -
-
ATH58p09694 LinkIcon - -
-
ATH58p10405 LinkIcon - -
-
ATH59p07488 LinkIcon - -
-
ATH59p08109 LinkIcon - -
-
ATH59p08113 LinkIcon - -
-
ATH61p09403 LinkIcon - -
-
ATH61p10043 LinkIcon - -
-
ATH62p07084 LinkIcon - -
-
ATH62p07652 LinkIcon - -
-
ATH63p07939 LinkIcon - -
-
ATH63p08599 LinkIcon - -
-
ATH63p10273 LinkIcon - -
-
ATH63p10529 LinkIcon - -
-
ATH63p11031 LinkIcon - -
-
ATH63p11288 LinkIcon - -
-
ATH64p10070 LinkIcon - -
-
ATH64p10073 LinkIcon - -
-
ATH64p10778 LinkIcon - -
-
ATH64p10781 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g02640
beta-xylosidase 2 encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. beta-xylosidase 2 (BXL2); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 1 (TAIR:AT5G49360.1); Has 9578 Blast hits to 8300 proteins in 1224 species: Archae - 65; Bacteria - 5802; Metazoa - 17; Fungi - 1614; Plants - 527; Viruses - 0; Other Eukaryotes - 1553 (source: NCBI BLink).
2
at1g16490
myb domain protein 58 Member of the R2R3 factor gene family. myb domain protein 58 (MYB58); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 63 (TAIR:AT1G79180.1); Has 8863 Blast hits to 8152 proteins in 473 species: Archae - 0; Bacteria - 3; Metazoa - 752; Fungi - 456; Plants - 5848; Viruses - 6; Other Eukaryotes - 1798 (source: NCBI BLink).
3
at1g20850
xylem cysteine peptidase 2 - xylem cysteine peptidase 2 (XCP2); FUNCTIONS IN: cysteine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis, developmental programmed cell death; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: xylem cysteine peptidase 1 (TAIR:AT4G35350.1); Has 7701 Blast hits to 7638 proteins in 709 species: Archae - 59; Bacteria - 219; Metazoa - 3282; Fungi - 4; Plants - 1889; Viruses - 133; Other Eukaryotes - 2115 (source: NCBI BLink).
4
at1g23460
Pectin lyase-like superfamily protein - Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G70500.1); Has 4300 Blast hits to 4283 proteins in 531 species: Archae - 4; Bacteria - 1235; Metazoa - 14; Fungi - 1418; Plants - 1493; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
5
at1g23470
- - pseudogene, polygalacturonase (pectinase), putative, similar to polygalacturonase (Cucumis sativus) GI:6624205; contains Pfam profiles PF00461: Signal peptidase I, PF00295: Polygalacturonase (pectinase); blastp match of 69% identity and 4.8e-49 P-value to GP|6624205|dbj|BAA88472.1||AB035890 polygalacturonase {Cucumis sativus}
6
at1g56720
Protein kinase superfamily protein - Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G09440.1); Has 120691 Blast hits to 119279 proteins in 4439 species: Archae - 109; Bacteria - 14558; Metazoa - 44074; Fungi - 10018; Plants - 33595; Viruses - 426; Other Eukaryotes - 17911 (source: NCBI BLink).
7
at2g28760
UDP-XYL synthase 6 - UDP-XYL synthase 6 (UXS6); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-XYL synthase 5 (TAIR:AT3G46440.2); Has 45408 Blast hits to 45356 proteins in 3037 species: Archae - 861; Bacteria - 26677; Metazoa - 782; Fungi - 385; Plants - 1435; Viruses - 88; Other Eukaryotes - 15180 (source: NCBI BLink).
8
at4g29080
phytochrome-associated protein 2 phytochrome-associated protein 2 (PAP2) phytochrome-associated protein 2 (PAP2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of translation; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indoleacetic acid-induced protein 8 (TAIR:AT2G22670.4); Has 2237 Blast hits to 2234 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 2235; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
9
at5g12870
myb domain protein 46 Member of the R2R3 factor gene family. myb domain protein 46 (MYB46); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 83 (TAIR:AT3G08500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
10
at5g59290
UDP-glucuronic acid decarboxylase 3 Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. UDP-glucuronic acid decarboxylase 3 (UXS3); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: nucleotide-sugar metabolic process, D-xylose metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-XYL synthase 5 (TAIR:AT3G46440.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
11
at5g63580
flavonol synthase 2 encodes a protein whose sequence is similar to flavonol synthase flavonol synthase 2 (FLS2); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: flavonol synthase 1 (TAIR:AT5G08640.2); Has 7130 Blast hits to 7103 proteins in 905 species: Archae - 0; Bacteria - 928; Metazoa - 80; Fungi - 632; Plants - 4738; Viruses - 0; Other Eukaryotes - 752 (source: NCBI BLink).

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