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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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AGI locus IDs

Choosing cell X:" 28 " Y:" 4 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn019142 LinkIcon Negative ATH59n04248 LinkIcon PS001507 LinkIcon 0.940
(-)Shikimic acid; MS2; QqQ; negative; CE 10 V
   (-)Shikimic acid
  shikimate
  3,4,5-Trihydroxy-1-cyclohexene-1-carboxylic acid
  (3R,4S,5R)-(?)-3,4,5-Trihydroxy-1-cyclohexenecarboxylic acid
PS079407 LinkIcon 0.939
Suberic acid; MS2; QqQ; negative; CE 10 V
   Suberic acid
  Suberate
  Octanedioic acid
  1,6-Hexanedicarboxylic Acid
  Cork Acid
  Hexane-1,6-dicarboxylic acid
  Hexamethylenedicarboxylic acid
PM006108 LinkIcon 0.938
Coumaroylquinic acid; MS2; QIT; M-H; n.d.
   Coumaroylquinic acid
PM018654 LinkIcon 0.934
4,5-Diferuloylquinic acids; MS2; QqQ; M-H; 40eV
   4,5-Diferuloylquinic acids
  Cyclohexanecarboxylic acid, 1,3-dihydroxy-4,5-bis[[3-(4-hydroxy-3-methoxyphenyl)-1-oxo-2-propen-1-yl]oxy]-, (1R,3R,4S,5R)-
PM018624 LinkIcon 0.933
4-Feruloylquinic acids; MS2; QqQ; M-H; 20eV
   4-Feruloylquinic acids
  Cyclohexanecarboxylic acid, 1,3,5-trihydroxy-4-[[3-(4-hydroxy-3-methoxyphenyl)-1-oxo-2-propen-1-yl]oxy]-, (1.alpha.,3R,4.alpha.,5R)-
PM018643 LinkIcon 0.931
4-p-Coumaroyl-5-caffeoylquinic acids; MS2; QqQ; M-H; 40eV
   4-p-Coumaroyl-5-caffeoylquinic acids
  Cyclohexanecarboxylic acid, 3-[[3-(3,4-dihydroxyphenyl)-1-oxo-2-propen-1-yl]oxy]-1,5-dihydroxy-4-[[3-(4-hydroxyphenyl)-1-oxo-2-propen-1-yl]oxy]-, (1R,3R,4S,5R)-
PM018666 LinkIcon 0.928
4-Dimethoxycinnamoyl-5-caffeoylquinic acid; MS2; QqQ; M-H; 40eV
   4-Dimethoxycinnamoyl-5-caffeoylquinic acid
PS065707 LinkIcon 0.922
cis-Aconitic Acid; MS2; QqQ; negative; CE 10 V
   cis-Aconitic Acid
  Achilleaic acid
  cis-aconitate
  cis-Oxaloacetic acid
  cis-1,2,3-Propenetricarboxylic Acid
  cis-Propene-1,2,3-tricarboxylic acid
PS004607 LinkIcon 0.917
cis-Aconitic acid; MS2; QqQ; negative; CE 10 V
   cis-Aconitic acid
  Achilleaic acid
  cis-aconitate
  cis-Oxaloacetic acid
  cis-1,2,3-Propenetricarboxylic Acid
  cis-Propene-1,2,3-tricarboxylic acid
ATH57n03304 LinkIcon PS065707 LinkIcon 0.910
cis-Aconitic Acid; MS2; QqQ; negative; CE 10 V
   cis-Aconitic Acid
  Achilleaic acid
  cis-aconitate
  cis-Oxaloacetic acid
  cis-1,2,3-Propenetricarboxylic Acid
  cis-Propene-1,2,3-tricarboxylic acid
ATH59n04248 LinkIcon PM018631 LinkIcon 0.910
3-Caffeoyl-4-feruloylquinic acids; MS2; QqQ; M-H; 40eV
   3-Caffeoyl-4-feruloylquinic acids
  Cyclohexanecarboxylic acid, 3-[[3-(3,4-dihydroxyphenyl)-1-oxo-2-propen-1-yl]oxy]-1,5-dihydroxy-4-[[3-(4-hydroxy-3-methoxyphenyl)-1-oxo-2-propen-1-yl]oxy]-, (1S,3R,4R,5R)-
ATH57n03304 LinkIcon PS004607 LinkIcon 0.905
cis-Aconitic acid; MS2; QqQ; negative; CE 10 V
   cis-Aconitic acid
  Achilleaic acid
  cis-aconitate
  cis-Oxaloacetic acid
  cis-1,2,3-Propenetricarboxylic Acid
  cis-Propene-1,2,3-tricarboxylic acid
PS001507 LinkIcon 0.900
(-)Shikimic acid; MS2; QqQ; negative; CE 10 V
   (-)Shikimic acid
  shikimate
  3,4,5-Trihydroxy-1-cyclohexene-1-carboxylic acid
  (3R,4S,5R)-(?)-3,4,5-Trihydroxy-1-cyclohexenecarboxylic acid
ATH08n02947 LinkIcon - -
-
ATH09n03809 LinkIcon - -
-
ATH10n01169 LinkIcon - -
-
ATH63n02712 LinkIcon - -
-
ATH63n02715 LinkIcon - -
-
ATH64n03364 LinkIcon - -
-
ATH64n04105 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g18140
laccase 1 putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis). laccase 1 (LAC1); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 17 (TAIR:AT5G60020.1); Has 10262 Blast hits to 8380 proteins in 1481 species: Archae - 46; Bacteria - 4149; Metazoa - 461; Fungi - 3664; Plants - 1564; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).
2
at1g27740
root hair defective 6-like 4 Basic helix-loop-helix (bHLH) transcription factor that is sufficient to promote postmitotic cell growth in root-hair cells. RSL4 is a direct transcriptional target of RHD6 root hair defective 6-like 4 (RSL4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root hair initiation, response to auxin stimulus, positive regulation of transcription, cell growth, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: trichoblast, root; EXPRESSED DURING: 5 root hair formation; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G43175.1); Has 2802 Blast hits to 2796 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 24; Plants - 2776; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
3
at2g47460
myb domain protein 12 "MYB12 belongs to subgroup 7 of the R2R3-MYB family. It strongly activates the promoters of chalcone synthase (CHS), flavanone 3-hydroxylase (F3H), flavonol synthase (FLS) and - to a lesser extent - chalcone flavanone isomerase (CHI), but cannot activate the promoters of flavonoid-3'hydroxylase (F3'H) and dihydroflavonol 4-reductase (DF). The activation requires a functional MYB recognition element (MRE). Results from the myb12-1f allele indicate that an activation domain might be present in the C-terminus. Overexpression or knock-out plants do not show any obvious phenotype under greenhouse conditions. Young myb12-ko seedlings contain reduced amounts of flavonoids (quercetin and kaempferol), while seedlings as well as leaves of MYB12-OX plants displayed an increased flavonoid content. They did not show any significant difference in anthocyanin content. Expression of CHS and FLS shows a clear correlation to MYB12 expression levels. CHI and F3H show increased transcript levels in the MYB12-OX lines, but no differences in the knock-out. Even in the absence of functional MYB12, flavonol biosynthesis is not completely absent, suggesting functional redundancy. " The redundant factors are MYB11 and MYB111 although MYB12 is primarily required for flavonol biosynthesis in roots. myb domain protein 12 (MYB12); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 11 (TAIR:AT3G62610.1); Has 8833 Blast hits to 8133 proteins in 470 species: Archae - 0; Bacteria - 0; Metazoa - 786; Fungi - 423; Plants - 5965; Viruses - 6; Other Eukaryotes - 1653 (source: NCBI BLink).
4
at4g15290
Cellulose synthase family protein encodes a gene similar to cellulose synthase ATCSLB05; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like B3 (TAIR:AT2G32530.1); Has 2274 Blast hits to 2142 proteins in 418 species: Archae - 1; Bacteria - 625; Metazoa - 0; Fungi - 5; Plants - 1626; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
5
at4g29180
root hair specific 16 - root hair specific 16 (RHS16); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root hair; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT4G29450.1); Has 136747 Blast hits to 120807 proteins in 4421 species: Archae - 131; Bacteria - 13766; Metazoa - 43367; Fungi - 9914; Plants - 51055; Viruses - 402; Other Eukaryotes - 18112 (source: NCBI BLink).
6
at5g02270
non-intrinsic ABC protein 9 member of NAP subfamily non-intrinsic ABC protein 9 (NAP9); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G03905.1); Has 211585 Blast hits to 200727 proteins in 3497 species: Archae - 4296; Bacteria - 180035; Metazoa - 2718; Fungi - 1612; Plants - 1620; Viruses - 2; Other Eukaryotes - 21302 (source: NCBI BLink).
7
at5g26010
Protein phosphatase 2C family protein - Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G32950.1); Has 6065 Blast hits to 6055 proteins in 312 species: Archae - 2; Bacteria - 39; Metazoa - 1411; Fungi - 761; Plants - 2573; Viruses - 5; Other Eukaryotes - 1274 (source: NCBI BLink).
8
at5g44110
P-loop containing nucleoside triphosphate hydrolases superfamily protein Encodes a member of the NAP subfamily of ABC transporters. POP1; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G03905.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
9
at5g61350
Protein kinase superfamily protein - Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, flower, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Malectin/receptor-like protein kinase (InterPro:IPR021720), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Malectin/receptor-like protein kinase family protein (TAIR:AT4G39110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

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Integrated Genome Informatics Research Unit