Home Gene search Metabolite search PRIMe
 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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Keyword
AGI locus IDs

Choosing cell X:" 29 " Y:" 15 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adp001609 LinkIcon Positive ATH13p00045 LinkIcon PS108901 LinkIcon 0.955
Indole-3-aldehyde; MS2; QqQ; positive; CE 10 V
   Indole-3-aldehyde
  Indole-3-carbaldehyde
  3-Formylindole
  1H-indole-3-carbaldehyde
  beta-Indolylaldehyde
  Indole-3-carboxaldehyde
PS009101 LinkIcon 0.953
Indole-3-carboxyaldehyde; MS2; QqQ; positive; CE 10 V
   Indole-3-carboxyaldehyde
  Indole-3-aldehyde
  3-Formylindole
  1H-indole-3-carbaldehyde
  beta-Indolylaldehyde
  Indole-3-carboxaldehyde
PT101630 LinkIcon 0.948
Acetylcholine chloride; MS2; Q-Tof; [M+H]+
   Acetylcholine chloride
  Ach
  2-Acetoxyethyltrimethylammonium chloride
  Acetylcholinium chloride
  Aceolinc
  Arterocholine
  Miochol
  Ovisot
  2-acetyloxyethyl-trimethylazanium
ATH14p00325 LinkIcon PS108901 LinkIcon 0.946
Indole-3-aldehyde; MS2; QqQ; positive; CE 10 V
   Indole-3-aldehyde
  Indole-3-carbaldehyde
  3-Formylindole
  1H-indole-3-carbaldehyde
  beta-Indolylaldehyde
  Indole-3-carboxaldehyde
ATH13p00045 LinkIcon PS016301 LinkIcon 0.944
Acetylcholine chloride; MS2; QqQ; positive; CE 10 V
   Acetylcholine chloride
  Ach
  2-Acetoxyethyltrimethylammonium chloride
  Acetylcholinium chloride
  Aceolinc
  Arterocholine
  Miochol
  Ovisot
ATH14p00325 LinkIcon PS009101 LinkIcon 0.944
Indole-3-carboxyaldehyde; MS2; QqQ; positive; CE 10 V
   Indole-3-carboxyaldehyde
  Indole-3-aldehyde
  3-Formylindole
  1H-indole-3-carbaldehyde
  beta-Indolylaldehyde
  Indole-3-carboxaldehyde
ATH63p00834 LinkIcon PS097702 LinkIcon 0.944
D-2-Aminoadipic acid; MS2; QqQ; positive; CE 20 V
   D-2-Aminoadipic acid
  D-Aad
  D-Ho-Glu
  D-2-Aminoadipate
  D-alpha-Aminoadipic Acid
  (R)-2-Aminohexanedioic acid
  D-Homoglutamic acid
  D-2-Aminohexanedioate
  L-2-Aminoadipic Acid
  L-Aad
  L-Ho-Glu
  L-2-Aminoadipate
  L-alpha-Aminoadipic Acid
  (S)-2-Aminohexanedioic acid
  L-Homoglutamic acid
  L-2-Aminohexanedioate
ATH14p00325 LinkIcon PT101630 LinkIcon 0.937
Acetylcholine chloride; MS2; Q-Tof; [M+H]+
   Acetylcholine chloride
  Ach
  2-Acetoxyethyltrimethylammonium chloride
  Acetylcholinium chloride
  Aceolinc
  Arterocholine
  Miochol
  Ovisot
  2-acetyloxyethyl-trimethylazanium
PS016301 LinkIcon 0.934
Acetylcholine chloride; MS2; QqQ; positive; CE 10 V
   Acetylcholine chloride
  Ach
  2-Acetoxyethyltrimethylammonium chloride
  Acetylcholinium chloride
  Aceolinc
  Arterocholine
  Miochol
  Ovisot
ATH13p00045 LinkIcon PS096802 LinkIcon 0.930
5-Hydroxyindole-3-acetate ; MS2; QqQ; positive; CE 20 V
   5-Hydroxyindole-3-acetate
  5-HIAA
  5-Hydroxy-IAA
  5-Hydroxyindole-3-acetic acid
  5-Hydroxyindol-3-ylacetic acid
  5-Hydroxyindolylacetic Acid
  5-Hydroxyheteroauxin
  5-Oxyindoleacetic acid
  5-Hydroxyheteroauxin
PS080001 LinkIcon 0.929
L-beta-Homoisoleucine hydrochloride; MS2; QqQ; positive; CE 10 V
   L-beta-Homoisoleucine hydrochloride
  (3R,4S)-3-Amino-4-methylhexanoic acid hydrochloride
ATH13p01069 LinkIcon PS108901 LinkIcon 0.922
Indole-3-aldehyde; MS2; QqQ; positive; CE 10 V
   Indole-3-aldehyde
  Indole-3-carbaldehyde
  3-Formylindole
  1H-indole-3-carbaldehyde
  beta-Indolylaldehyde
  Indole-3-carboxaldehyde
ATH56p00321 LinkIcon PS108901 LinkIcon 0.922
Indole-3-aldehyde; MS2; QqQ; positive; CE 10 V
   Indole-3-aldehyde
  Indole-3-carbaldehyde
  3-Formylindole
  1H-indole-3-carbaldehyde
  beta-Indolylaldehyde
  Indole-3-carboxaldehyde
ATH13p01069 LinkIcon PS009101 LinkIcon 0.921
Indole-3-carboxyaldehyde; MS2; QqQ; positive; CE 10 V
   Indole-3-carboxyaldehyde
  Indole-3-aldehyde
  3-Formylindole
  1H-indole-3-carbaldehyde
  beta-Indolylaldehyde
  Indole-3-carboxaldehyde
ATH14p00325 LinkIcon PS096802 LinkIcon 0.920
5-Hydroxyindole-3-acetate ; MS2; QqQ; positive; CE 20 V
   5-Hydroxyindole-3-acetate
  5-HIAA
  5-Hydroxy-IAA
  5-Hydroxyindole-3-acetic acid
  5-Hydroxyindol-3-ylacetic acid
  5-Hydroxyindolylacetic Acid
  5-Hydroxyheteroauxin
  5-Oxyindoleacetic acid
  5-Hydroxyheteroauxin
ATH56p00321 LinkIcon PS009101 LinkIcon 0.920
Indole-3-carboxyaldehyde; MS2; QqQ; positive; CE 10 V
   Indole-3-carboxyaldehyde
  Indole-3-aldehyde
  3-Formylindole
  1H-indole-3-carbaldehyde
  beta-Indolylaldehyde
  Indole-3-carboxaldehyde
ATH14p00325 LinkIcon PS080001 LinkIcon 0.918
L-beta-Homoisoleucine hydrochloride; MS2; QqQ; positive; CE 10 V
   L-beta-Homoisoleucine hydrochloride
  (3R,4S)-3-Amino-4-methylhexanoic acid hydrochloride
ATH13p00045 LinkIcon PS096803 LinkIcon 0.916
5-Hydroxyindole-3-acetate ; MS2; QqQ; positive; CE 30 V
   5-Hydroxyindole-3-acetate
  5-HIAA
  5-Hydroxy-IAA
  5-Hydroxyindole-3-acetic acid
  5-Hydroxyindol-3-ylacetic acid
  5-Hydroxyindolylacetic Acid
  5-Hydroxyheteroauxin
  5-Oxyindoleacetic acid
  5-Hydroxyheteroauxin
ATH13p01069 LinkIcon PT101630 LinkIcon 0.916
Acetylcholine chloride; MS2; Q-Tof; [M+H]+
   Acetylcholine chloride
  Ach
  2-Acetoxyethyltrimethylammonium chloride
  Acetylcholinium chloride
  Aceolinc
  Arterocholine
  Miochol
  Ovisot
  2-acetyloxyethyl-trimethylazanium
ATH63p00595 LinkIcon PS063802 LinkIcon 0.915
L-2-Aminoadipic Acid ; MS2; QqQ; positive; CE 20 V
   L-2-Aminoadipic Acid
  L-Aad
  L-Ho-Glu
  L-2-Aminoadipate
  L-alpha-Aminoadipic Acid
  (S)-2-Aminohexanedioic acid
  L-Homoglutamic acid
  L-2-Aminohexanedioate
  D-2-Aminoadipic acid
  D-Aad
  D-Ho-Glu
  D-2-Aminoadipate
  D-alpha-Aminoadipic Acid
  (R)-2-Aminohexanedioic acid
  D-Homoglutamic acid
  D-2-Aminohexanedioate
ATH63p01100 LinkIcon PT100393 LinkIcon 0.915
Adenine; MS2; Q-Tof; [M+H]+
   Adenine
  6-AP
  ADE
  6-Aminopurine
  Vitamin B4
  Adeninimine
  Leucon
  1,6-Dihydro-6-iminopurine
  7H-purin-6-amine
PM018194 LinkIcon 0.914
Adenosine; MS2; Q-TOF; M+H; 15->55V
   Adenosine
  9-b-D-Ribofuranosyladenine
ATH13p01069 LinkIcon PS016301 LinkIcon 0.913
Acetylcholine chloride; MS2; QqQ; positive; CE 10 V
   Acetylcholine chloride
  Ach
  2-Acetoxyethyltrimethylammonium chloride
  Acetylcholinium chloride
  Aceolinc
  Arterocholine
  Miochol
  Ovisot
ATH14p00808 LinkIcon PS108901 LinkIcon 0.913
Indole-3-aldehyde; MS2; QqQ; positive; CE 10 V
   Indole-3-aldehyde
  Indole-3-carbaldehyde
  3-Formylindole
  1H-indole-3-carbaldehyde
  beta-Indolylaldehyde
  Indole-3-carboxaldehyde
ATH58p00048 LinkIcon PS108901 LinkIcon 0.913
Indole-3-aldehyde; MS2; QqQ; positive; CE 10 V
   Indole-3-aldehyde
  Indole-3-carbaldehyde
  3-Formylindole
  1H-indole-3-carbaldehyde
  beta-Indolylaldehyde
  Indole-3-carboxaldehyde
ATH63p01100 LinkIcon PT106750 LinkIcon 0.913
5'-Deoxy-5'-Methylthioadenosine; MS2; Q-Tof; [M+H]+
   5'-Deoxy-5'-Methylthioadenosine
  MTA
  Vitamin L2
  Thiomethyladenosine
  5-Methylthioadenosine
  (2R,3R,4S,5S)-2-(6-aminopurin-9-yl)-5-(methylsulfanylmethyl)oxolane-3,4-diol
ATH58p00048 LinkIcon PS009101 LinkIcon 0.912
Indole-3-carboxyaldehyde; MS2; QqQ; positive; CE 10 V
   Indole-3-carboxyaldehyde
  Indole-3-aldehyde
  3-Formylindole
  1H-indole-3-carbaldehyde
  beta-Indolylaldehyde
  Indole-3-carboxaldehyde
ATH14p00808 LinkIcon PS009101 LinkIcon 0.911
Indole-3-carboxyaldehyde; MS2; QqQ; positive; CE 10 V
   Indole-3-carboxyaldehyde
  Indole-3-aldehyde
  3-Formylindole
  1H-indole-3-carbaldehyde
  beta-Indolylaldehyde
  Indole-3-carboxaldehyde
ATH63p01100 LinkIcon PT111710 LinkIcon 0.911
Adenosine; MS2; Q-Tof; [M+H]+
   Adenosine
  9-beta-D-Ribofuranosyladenine
  Adenine riboside
  Sandesin
  Boniton
  Myocol
  Nucleocardyl
  (2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol
ATH13p00045 LinkIcon PS096804 LinkIcon 0.910
5-Hydroxyindole-3-acetate ; MS2; QqQ; positive; CE 40 V
   5-Hydroxyindole-3-acetate
  5-HIAA
  5-Hydroxy-IAA
  5-Hydroxyindole-3-acetic acid
  5-Hydroxyindol-3-ylacetic acid
  5-Hydroxyindolylacetic Acid
  5-Hydroxyheteroauxin
  5-Oxyindoleacetic acid
  5-Hydroxyheteroauxin
  L-beta-homoleucine-HCl
  (S)-3-Amino-5-methylhexanoic acid hydrochloride
ATH56p00321 LinkIcon PT101630 LinkIcon 0.910
Acetylcholine chloride; MS2; Q-Tof; [M+H]+
   Acetylcholine chloride
  Ach
  2-Acetoxyethyltrimethylammonium chloride
  Acetylcholinium chloride
  Aceolinc
  Arterocholine
  Miochol
  Ovisot
  2-acetyloxyethyl-trimethylazanium
ATH11p00810 LinkIcon PS108901 LinkIcon 0.909
Indole-3-aldehyde; MS2; QqQ; positive; CE 10 V
   Indole-3-aldehyde
  Indole-3-carbaldehyde
  3-Formylindole
  1H-indole-3-carbaldehyde
  beta-Indolylaldehyde
  Indole-3-carboxaldehyde
ATH56p00321 LinkIcon PS016301 LinkIcon 0.908
Acetylcholine chloride; MS2; QqQ; positive; CE 10 V
   Acetylcholine chloride
  Ach
  2-Acetoxyethyltrimethylammonium chloride
  Acetylcholinium chloride
  Aceolinc
  Arterocholine
  Miochol
  Ovisot
ATH11p00810 LinkIcon PS009101 LinkIcon 0.907
Indole-3-carboxyaldehyde; MS2; QqQ; positive; CE 10 V
   Indole-3-carboxyaldehyde
  Indole-3-aldehyde
  3-Formylindole
  1H-indole-3-carbaldehyde
  beta-Indolylaldehyde
  Indole-3-carboxaldehyde
ATH14p00325 LinkIcon PS096803 LinkIcon 0.905
5-Hydroxyindole-3-acetate ; MS2; QqQ; positive; CE 30 V
   5-Hydroxyindole-3-acetate
  5-HIAA
  5-Hydroxy-IAA
  5-Hydroxyindole-3-acetic acid
  5-Hydroxyindol-3-ylacetic acid
  5-Hydroxyindolylacetic Acid
  5-Hydroxyheteroauxin
  5-Oxyindoleacetic acid
  5-Hydroxyheteroauxin
ATH58p00048 LinkIcon PT101630 LinkIcon 0.904
Acetylcholine chloride; MS2; Q-Tof; [M+H]+
   Acetylcholine chloride
  Ach
  2-Acetoxyethyltrimethylammonium chloride
  Acetylcholinium chloride
  Aceolinc
  Arterocholine
  Miochol
  Ovisot
  2-acetyloxyethyl-trimethylazanium
ATH14p00808 LinkIcon PT101630 LinkIcon 0.902
Acetylcholine chloride; MS2; Q-Tof; [M+H]+
   Acetylcholine chloride
  Ach
  2-Acetoxyethyltrimethylammonium chloride
  Acetylcholinium chloride
  Aceolinc
  Arterocholine
  Miochol
  Ovisot
  2-acetyloxyethyl-trimethylazanium
ATH11p00810 LinkIcon PT101630 LinkIcon 0.901
Acetylcholine chloride; MS2; Q-Tof; [M+H]+
   Acetylcholine chloride
  Ach
  2-Acetoxyethyltrimethylammonium chloride
  Acetylcholinium chloride
  Aceolinc
  Arterocholine
  Miochol
  Ovisot
  2-acetyloxyethyl-trimethylazanium
ATH58p00048 LinkIcon PS016301 LinkIcon 0.900
Acetylcholine chloride; MS2; QqQ; positive; CE 10 V
   Acetylcholine chloride
  Ach
  2-Acetoxyethyltrimethylammonium chloride
  Acetylcholinium chloride
  Aceolinc
  Arterocholine
  Miochol
  Ovisot
ATH63p01100 LinkIcon PT111640 LinkIcon 0.900
Adenosine 3'-monophosphate From Yeast; MS2; Q-Tof; [M+H]+
   Adenosine 3'-monophosphate From Yeast
  3'-AMP
  3'-Adenylic acid
  Synadenylic acid
  3'-Adenosine monophosphate
  AMP 3'-phosphate
  [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate
ATH06p00046 LinkIcon - -
-
ATH06p00797 LinkIcon - -
-
ATH07p00044 LinkIcon - -
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ATH07p00047 LinkIcon - -
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ATH07p01071 LinkIcon - -
-
ATH07p01334 LinkIcon - -
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ATH08p00046 LinkIcon - -
-
ATH08p00793 LinkIcon - -
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ATH09p00322 LinkIcon - -
-
ATH09p00325 LinkIcon - -
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ATH09p00809 LinkIcon - -
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ATH09p00812 LinkIcon - -
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ATH10p00317 LinkIcon - -
-
ATH10p01331 LinkIcon - -
-
ATH10p01334 LinkIcon - -
-
ATH11p00048 LinkIcon - -
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ATH11p00807 LinkIcon - -
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ATH12p00046 LinkIcon - -
-
ATH12p00324 LinkIcon - -
-
ATH12p00787 LinkIcon - -
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ATH12p00790 LinkIcon - -
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ATH13p01072 LinkIcon - -
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ATH56p00591 LinkIcon - -
-
ATH56p00845 LinkIcon - -
-
ATH57p00044 LinkIcon - -
-
ATH57p00047 LinkIcon - -
-
ATH57p01109 LinkIcon - -
-
ATH57p01112 LinkIcon - -
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ATH58p01376 LinkIcon - -
-
ATH58p01379 LinkIcon - -
-
ATH59p00047 LinkIcon - -
-
ATH59p01106 LinkIcon - -
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ATH59p01378 LinkIcon - -
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ATH61p01638 LinkIcon - -
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ATH61p01910 LinkIcon - -
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ATH61p02700 LinkIcon - -
-
ATH61p02703 LinkIcon - -
-
ATH62p00319 LinkIcon - -
-
ATH62p00322 LinkIcon - -
-
ATH62p01109 LinkIcon - -
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ATH62p01375 LinkIcon - -
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ATH63p00318 LinkIcon - -
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ATH63p00321 LinkIcon - -
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ATH63p00592 LinkIcon - -
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ATH63p01374 LinkIcon - -
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ATH64p00047 LinkIcon - -
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ATH64p01105 LinkIcon - -
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2 adp007259 LinkIcon Positive ATH07p03976 LinkIcon - -
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ATH63p03829 LinkIcon - -
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ATH63p04155 LinkIcon - -
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2. Gene information

No. ID Short description Curator summary Computational description
1
at1g16780
Inorganic H pyrophosphatase family protein Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves. VHP2;2; FUNCTIONS IN: inorganic diphosphatase activity, hydrogen-translocating pyrophosphatase activity; INVOLVED IN: proton transport; LOCATED IN: Golgi apparatus, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: vacuolar H+-pyrophosphatase 2 (TAIR:AT1G78920.2); Has 6490 Blast hits to 6472 proteins in 788 species: Archae - 67; Bacteria - 1308; Metazoa - 5; Fungi - 1; Plants - 281; Viruses - 0; Other Eukaryotes - 4828 (source: NCBI BLink).
2
at1g31150
Domain of unknown function (DUF1985) - FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1985 (InterPro:IPR015410), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1985) (TAIR:AT1G36970.1); Has 361 Blast hits to 354 proteins in 51 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 6; Plants - 334; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
3
at1g32930
Galactosyltransferase family protein - Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT1G05170.1); Has 1058 Blast hits to 1054 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 501; Fungi - 0; Plants - 540; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
4
at1g62970
Chaperone DnaJ-domain superfamily protein - Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT5G09540.1); Has 127172 Blast hits to 68298 proteins in 2468 species: Archae - 200; Bacteria - 18173; Metazoa - 48019; Fungi - 25520; Plants - 11802; Viruses - 2576; Other Eukaryotes - 20882 (source: NCBI BLink).
5
at1g63020
nuclear RNA polymerase D1A Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D). Required for posttranscriptional gene silencing. nuclear RNA polymerase D1A (NRPD1A); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083), Protein of unknown function DUF3223 (InterPro:IPR021602), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase D1B (TAIR:AT2G40030.1); Has 18758 Blast hits to 17462 proteins in 6889 species: Archae - 580; Bacteria - 5923; Metazoa - 1639; Fungi - 1387; Plants - 5197; Viruses - 287; Other Eukaryotes - 3745 (source: NCBI BLink).
6
at1g71830
somatic embryogenesis receptor-like kinase 1 Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later somatic embryogenesis receptor-like kinase 1 (SERK1); FUNCTIONS IN: transmembrane receptor protein serine/threonine kinase activity, kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: plasma membrane, protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: somatic embryogenesis receptor-like kinase 2 (TAIR:AT1G34210.1); Has 181670 Blast hits to 121787 proteins in 4268 species: Archae - 123; Bacteria - 18224; Metazoa - 45784; Fungi - 8994; Plants - 88758; Viruses - 411; Other Eukaryotes - 19376 (source: NCBI BLink).
7
at1g74420
fucosyltransferase 3 Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundantwith FUT1. fucosyltransferase 3 (FUT3); FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: fucosyltransferase 1 (TAIR:AT2G03220.1); Has 325 Blast hits to 317 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 325; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
8
at2g15400
DNA-directed RNA polymerase family protein Non-catalytic subunit of Nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, At2g15430 can substitute for At2g15400 in the context of Pol V and encodes the equivalent subunit of Pol II and Pol IV. NRPE3B; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT2G15430.1); Has 1357 Blast hits to 1356 proteins in 354 species: Archae - 243; Bacteria - 1; Metazoa - 278; Fungi - 347; Plants - 109; Viruses - 0; Other Eukaryotes - 379 (source: NCBI BLink).
9
at2g15430
DNA-directed RNA polymerase family protein Non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, encoded by At2g15400, can substitute for At2g15430 in the context of Pol V. NRPB3; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: in 6 components; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT2G15400.1); Has 1362 Blast hits to 1362 proteins in 353 species: Archae - 243; Bacteria - 1; Metazoa - 278; Fungi - 347; Plants - 109; Viruses - 0; Other Eukaryotes - 384 (source: NCBI BLink).
10
at2g16390
SNF2 domain-containing protein / helicase domain-containing protein Putative chromatin remodeling protein, member of a plant-specific subfamily of SWI2/SNF2-like proteins. Mutations nearly eliminate non-CpG methylation at a target promoter but do not affect rDNA or centromere methylation. Cooperates with PolIVb to facilitate RNA-directed de novo methylation and silencing of homologous DNA. Endogenous targets include intergenic regions near retrotransposon LTRs or short RNA encoding sequences that might epigenetically regulate adjacent genes. May be used to establish a basal yet reversible level of silencing in euchromatin. DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1 (DRD1); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: DNA methylation, production of siRNA involved in RNA interference; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 34 (TAIR:AT2G21450.1); Has 13448 Blast hits to 11886 proteins in 1506 species: Archae - 91; Bacteria - 3564; Metazoa - 3285; Fungi - 3284; Plants - 1229; Viruses - 105; Other Eukaryotes - 1890 (source: NCBI BLink).
11
at2g40030
nuclear RNA polymerase D1B Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB1 and the E. coli RNA polymerase beta prime subunit. Required for normal RNA-directed DNA methylation at non-CG methylation sites and transgene silencing. nuclear RNA polymerase D1B (NRPD1B); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3223 (InterPro:IPR021602), RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase D1A (TAIR:AT1G63020.2); Has 52919 Blast hits to 31940 proteins in 6835 species: Archae - 366; Bacteria - 10380; Metazoa - 13235; Fungi - 6920; Plants - 7147; Viruses - 757; Other Eukaryotes - 14114 (source: NCBI BLink).
12
at2g44830
Protein kinase superfamily protein - Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: D6 protein kinase like 2 (TAIR:AT5G47750.1); Has 114332 Blast hits to 86906 proteins in 3497 species: Archae - 36; Bacteria - 13769; Metazoa - 45842; Fungi - 12821; Plants - 20261; Viruses - 350; Other Eukaryotes - 21253 (source: NCBI BLink).
13
at2g45340
Leucine-rich repeat protein kinase family protein - Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G51560.1); Has 128804 Blast hits to 78819 proteins in 2294 species: Archae - 81; Bacteria - 6216; Metazoa - 31402; Fungi - 3884; Plants - 74763; Viruses - 171; Other Eukaryotes - 12287 (source: NCBI BLink).
14
at3g02790
zinc finger (C2H2 type) family protein - zinc finger (C2H2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G16470.1); Has 86 Blast hits to 86 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
15
at3g49250
defective in meristem silencing 3 Similar to hinge-domain region of structural maintenance of chromosomes (SMC)proteins.Putative chromosome architecture protein that can potentialy link nucleic acids in facilitating an RNA1-mediated epigenetic modification involving secondary siRNA and spreading of DNA methylation. DEFECTIVE IN MERISTEM SILENCING 3 (DMS3); BEST Arabidopsis thaliana protein match is: gamma-irradiation and mitomycin c induced 1 (TAIR:AT5G24280.1); Has 82 Blast hits to 81 proteins in 17 species: Archae - 6; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
16
at4g11130
RNA-dependent RNA polymerase 2 Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). RNA-dependent RNA polymerase 2 (RDR2); CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase 1 (TAIR:AT1G14790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
17
at4g24790
AAA-type ATPase family protein - AAA-type ATPase family protein; FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA polymerase III complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunit gamma/ tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G14460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
18
at4g31615
Transcriptional factor B3 family protein - Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT4G31620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
19
at4g36930
basic helix-loop-helix (bHLH) DNA-binding superfamily protein Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy. SPATULA (SPT); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G67110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
20
at5g04620
biotin F The cDNA encoding 7-keto-8-aminopelargonic acid (KAPA) synthase, the first committed enzyme of the biotin synthesis pathway has been cloned and its molecular function confirmed (functional complementation of an E. coli mutant). The subcellular localization of the enzyme (cytosol) proves that the biotin biosynthesis in plants takes place in different compartments which differs from the biosynthetic route found in microorganisms. biotin F (BIOF); CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: long chain base2 (TAIR:AT5G23670.2); Has 10202 Blast hits to 10184 proteins in 2138 species: Archae - 77; Bacteria - 6906; Metazoa - 648; Fungi - 572; Plants - 222; Viruses - 9; Other Eukaryotes - 1768 (source: NCBI BLink).
21
at5g44730
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, phosphoglycolate phosphatase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, REG-2-like (InterPro:IPR011949), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); Has 2267 Blast hits to 2267 proteins in 873 species: Archae - 225; Bacteria - 1528; Metazoa - 193; Fungi - 90; Plants - 101; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).
22
at5g54670
kinesin 3 Encodes a truncated KatC polypeptide (KatC(207-754)), which includes the carboxyl-terminal region of KatC. This was expressed in Escherichia coli and was shown to possess microtubule-stimulated ATPase activity. kinesin 3 (ATK3); FUNCTIONS IN: microtubule binding, microtubule motor activity, ATPase activity; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin 2 (TAIR:AT4G27180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

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Integrated Genome Informatics Research Unit