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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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Keyword
AGI locus IDs

Choosing cell X:" 2 " Y:" 14 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn034733 LinkIcon Negative ATH06n05013 LinkIcon - -
-
ATH07n04690 LinkIcon - -
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ATH07n05300 LinkIcon - -
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ATH08n08453 LinkIcon - -
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ATH09n07401 LinkIcon - -
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ATH10n04898 LinkIcon - -
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ATH10n05537 LinkIcon - -
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ATH11n04741 LinkIcon - -
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ATH57n08646 LinkIcon - -
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ATH57n09133 LinkIcon - -
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ATH58n09029 LinkIcon - -
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ATH58n09295 LinkIcon - -
-
ATH59n08579 LinkIcon - -
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ATH59n09321 LinkIcon - -
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ATH60n09223 LinkIcon - -
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ATH60n09445 LinkIcon - -
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ATH61n07999 LinkIcon - -
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ATH61n08702 LinkIcon - -
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ATH62n09029 LinkIcon - -
-
2 adn037424 LinkIcon Negative ATH07n05552 LinkIcon - -
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ATH07n06465 LinkIcon - -
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ATH08n08251 LinkIcon - -
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ATH09n08293 LinkIcon - -
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ATH09n08954 LinkIcon - -
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ATH10n05729 LinkIcon - -
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ATH10n05732 LinkIcon - -
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ATH10n05934 LinkIcon - -
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ATH12n04207 LinkIcon - -
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ATH14n07982 LinkIcon - -
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ATH56n10417 LinkIcon - -
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ATH57n09604 LinkIcon - -
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ATH57n09850 LinkIcon - -
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ATH58n09539 LinkIcon - -
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ATH58n09790 LinkIcon - -
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ATH58n10049 LinkIcon - -
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ATH59n09312 LinkIcon - -
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ATH59n09803 LinkIcon - -
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ATH60n09213 LinkIcon - -
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ATH60n09918 LinkIcon - -
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ATH61n08472 LinkIcon - -
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ATH61n08908 LinkIcon - -
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ATH62n09019 LinkIcon - -
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ATH62n09489 LinkIcon - -
-
3 adn040699 LinkIcon Negative ATH14n08103 LinkIcon PM019113 LinkIcon 0.952
Glabrol; MS2; QIT; M-H; 35%
   Glabrol
  4H-1-Benzopyran-4-one, 2,3-dihydro-7-hydroxy-2-[4-hydroxy-3-(3-methyl-2-buten-1-yl)phenyl]-8-(3-methyl-2-buten-1-yl)-, (2S)-
PM008033 LinkIcon 0.951
9-(Methylsulfinyl)nonanoic acid; MS2; QIT; M+Na; 15->55V
   9-(Methylsulfinyl)nonanoic acid
ATH11n05552 LinkIcon PM018019 LinkIcon 0.945
Indol-3-ylmethyl glucosinolate; MS2; Q-TOF; M-H; 15->55V
   Indol-3-ylmethyl glucosinolate
  glucobrassicin
ATH61n09536 LinkIcon PM018019 LinkIcon 0.922
Indol-3-ylmethyl glucosinolate; MS2; Q-TOF; M-H; 15->55V
   Indol-3-ylmethyl glucosinolate
  glucobrassicin
ATH07n05951 LinkIcon - -
-
ATH07n06634 LinkIcon - -
-
ATH08n08839 LinkIcon - -
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ATH09n09521 LinkIcon - -
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ATH12n04813 LinkIcon - -
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ATH13n08234 LinkIcon - -
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ATH14n08504 LinkIcon - -
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ATH59n10940 LinkIcon - -
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ATH60n10097 LinkIcon - -
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ATH61n09115 LinkIcon - -
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ATH62n09843 LinkIcon - -
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ATH64n10002 LinkIcon - -
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4 adp008564 LinkIcon Positive ATH14p04851 LinkIcon - -
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ATH14p05680 LinkIcon - -
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ATH63p06111 LinkIcon - -
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ATH63p06114 LinkIcon - -
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ATH64p04774 LinkIcon - -
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ATH64p06050 LinkIcon - -
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2. Gene information

No. ID Short description Curator summary Computational description
1
at3g08860
PYRIMIDINE 4 Encodes a protein that is predicted to have beta-alanine aminotransferase activity. PYRIMIDINE 4 (PYD4); FUNCTIONS IN: pyridoxal phosphate binding, transaminase activity, catalytic activity, alanine-glyoxylate transaminase activity; INVOLVED IN: cellular response to nitrogen levels; LOCATED IN: mitochondrion; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: alanine:glyoxylate aminotransferase 3 (TAIR:AT2G38400.1); Has 35951 Blast hits to 35930 proteins in 2736 species: Archae - 736; Bacteria - 23081; Metazoa - 661; Fungi - 840; Plants - 399; Viruses - 17; Other Eukaryotes - 10217 (source: NCBI BLink).
2
at3g13672
TRAF-like superfamily protein - TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Seven-in-absentia protein, sina (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: seven in absentia of Arabidopsis 2 (TAIR:AT3G58040.1); Has 478 Blast hits to 478 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
3
at3g26220
cytochrome P450, family 71, subfamily B, polypeptide 3 cytochrome P450 monooxygenase "cytochrome P450, family 71, subfamily B, polypeptide 3" (CYP71B3); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily B, polypeptide 24 (TAIR:AT3G26230.1); Has 33108 Blast hits to 32883 proteins in 1657 species: Archae - 48; Bacteria - 3236; Metazoa - 11836; Fungi - 7129; Plants - 9646; Viruses - 3; Other Eukaryotes - 1210 (source: NCBI BLink).
4
at4g16640
Matrixin family protein - Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: Matrixin family protein (TAIR:AT2G45040.1); Has 2701 Blast hits to 2501 proteins in 212 species: Archae - 6; Bacteria - 141; Metazoa - 2219; Fungi - 5; Plants - 183; Viruses - 44; Other Eukaryotes - 103 (source: NCBI BLink).
5
at5g24540
beta glucosidase 31 - beta glucosidase 31 (BGLU31); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sepal; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 32 (TAIR:AT5G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
6
at5g26920
Cam-binding protein 60-like G Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g). The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants. cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling. Cam-binding protein 60-like G (CBP60G); CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT4G25800.2); Has 271 Blast hits to 271 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 271; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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Integrated Genome Informatics Research Unit