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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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Keyword
AGI locus IDs

Choosing cell X:" 2 " Y:" 2 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn019633 LinkIcon Negative ATH11n01424 LinkIcon - -
-
ATH11n01771 LinkIcon - -
-
ATH13n02777 LinkIcon - -
-
ATH13n03342 LinkIcon - -
-
ATH61n04416 LinkIcon - -
-
ATH63n03209 LinkIcon - -
-
ATH63n03705 LinkIcon - -
-
ATH63n03949 LinkIcon - -
-
2 adn028477 LinkIcon Negative ATH13n04817 LinkIcon PM018077 LinkIcon 0.900
1-O-b-D-Glucopyranosyl sinapate; MS2; Q-TOF; M-H; 15->55V
   1-O-b-D-Glucopyranosyl sinapate
ATH06n02728 LinkIcon - -
-
ATH06n03179 LinkIcon - -
-
ATH07n03052 LinkIcon - -
-
ATH07n03411 LinkIcon - -
-
ATH07n03519 LinkIcon - -
-
ATH08n05836 LinkIcon - -
-
ATH09n05436 LinkIcon - -
-
ATH09n05440 LinkIcon - -
-
ATH10n03060 LinkIcon - -
-
ATH10n03320 LinkIcon - -
-
ATH13n04571 LinkIcon - -
-
ATH13n05151 LinkIcon - -
-
ATH14n05034 LinkIcon - -
-
ATH14n05039 LinkIcon - -
-
ATH56n06110 LinkIcon - -
-
ATH56n06115 LinkIcon - -
-
ATH56n07366 LinkIcon - -
-
ATH57n06142 LinkIcon - -
-
ATH57n06883 LinkIcon - -
-
ATH58n06185 LinkIcon - -
-
ATH59n06063 LinkIcon - -
-
ATH60n06030 LinkIcon - -
-
ATH60n06293 LinkIcon - -
-
ATH60n06732 LinkIcon - -
-
ATH60n06997 LinkIcon - -
-
ATH61n05704 LinkIcon - -
-
ATH62n05676 LinkIcon - -
-
ATH63n05480 LinkIcon - -
-
ATH63n05744 LinkIcon - -
-
ATH63n06195 LinkIcon - -
-
ATH64n06111 LinkIcon - -
-
ATH64n06492 LinkIcon - -
-
3 adn044507 LinkIcon Negative ATH60n12333 LinkIcon - -
-
4 adn057984 LinkIcon Negative ATH06n08598 LinkIcon - -
-
ATH06n09484 LinkIcon - -
-
ATH07n10520 LinkIcon - -
-
ATH07n11152 LinkIcon - -
-
ATH08n12690 LinkIcon - -
-
ATH08n13277 LinkIcon - -
-
ATH09n12275 LinkIcon - -
-
ATH09n12854 LinkIcon - -
-
ATH10n09706 LinkIcon - -
-
ATH10n10074 LinkIcon - -
-
ATH13n11612 LinkIcon - -
-
ATH13n11854 LinkIcon - -
-
ATH13n12321 LinkIcon - -
-
ATH13n12554 LinkIcon - -
-
ATH13n12785 LinkIcon - -
-
ATH62n14162 LinkIcon - -
-
ATH63n13826 LinkIcon - -
-
ATH63n14589 LinkIcon - -
-
ATH63n14839 LinkIcon - -
-
5 adn060866 LinkIcon Negative ATH13n12479 LinkIcon - -
-
ATH57n15066 LinkIcon - -
-
ATH59n15066 LinkIcon - -
-
ATH63n14509 LinkIcon - -
-
6 adn079039 LinkIcon Negative ATH07n12558 LinkIcon - -
-
ATH11n08743 LinkIcon - -
-
ATH13n14359 LinkIcon - -
-
ATH13n14730 LinkIcon - -
-
ATH57n17424 LinkIcon - -
-
ATH57n17677 LinkIcon - -
-
ATH59n17114 LinkIcon - -
-
ATH62n16682 LinkIcon - -
-
ATH63n16806 LinkIcon - -
-
ATH63n17044 LinkIcon - -
-
7 adp003800 LinkIcon Positive ATH63p01717 LinkIcon PT110880 LinkIcon 0.918
Sinapic acid; MS2; Q-Tof; [M+H]+
   Sinapic acid
  SA
  Sin
  Sinapate
  Sinapinic acid
  3,5-dimethoxy-4-hydroxycinnamic acid
  4-Hydroxy-3,5-dimethoxy-cinnamic acid
  (E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoic acid
ATH13p01679 LinkIcon PT110880 LinkIcon 0.915
Sinapic acid; MS2; Q-Tof; [M+H]+
   Sinapic acid
  SA
  Sin
  Sinapate
  Sinapinic acid
  3,5-dimethoxy-4-hydroxycinnamic acid
  4-Hydroxy-3,5-dimethoxy-cinnamic acid
  (E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoic acid
ATH63p02525 LinkIcon PT110880 LinkIcon 0.906
Sinapic acid; MS2; Q-Tof; [M+H]+
   Sinapic acid
  SA
  Sin
  Sinapate
  Sinapinic acid
  3,5-dimethoxy-4-hydroxycinnamic acid
  4-Hydroxy-3,5-dimethoxy-cinnamic acid
  (E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoic acid
ATH13p02480 LinkIcon PT110880 LinkIcon 0.902
Sinapic acid; MS2; Q-Tof; [M+H]+
   Sinapic acid
  SA
  Sin
  Sinapate
  Sinapinic acid
  3,5-dimethoxy-4-hydroxycinnamic acid
  4-Hydroxy-3,5-dimethoxy-cinnamic acid
  (E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoic acid
ATH06p01673 LinkIcon - -
-
ATH06p02464 LinkIcon - -
-
ATH06p02729 LinkIcon - -
-
ATH07p02201 LinkIcon - -
-
ATH07p02728 LinkIcon - -
-
ATH07p02731 LinkIcon - -
-
ATH08p01938 LinkIcon - -
-
ATH08p02473 LinkIcon - -
-
ATH09p02216 LinkIcon - -
-
ATH09p02757 LinkIcon - -
-
ATH10p02186 LinkIcon - -
-
ATH10p02189 LinkIcon - -
-
ATH10p02913 LinkIcon - -
-
ATH11p01950 LinkIcon - -
-
ATH11p02479 LinkIcon - -
-
ATH11p02482 LinkIcon - -
-
ATH12p02187 LinkIcon - -
-
ATH13p01682 LinkIcon - -
-
ATH56p02257 LinkIcon - -
-
ATH56p02532 LinkIcon - -
-
ATH57p02260 LinkIcon - -
-
ATH57p02806 LinkIcon - -
-
ATH57p02810 LinkIcon - -
-
ATH58p01986 LinkIcon - -
-
ATH58p02526 LinkIcon - -
-
ATH58p03057 LinkIcon - -
-
ATH59p02256 LinkIcon - -
-
ATH59p03059 LinkIcon - -
-
ATH59p03061 LinkIcon - -
-
ATH61p03849 LinkIcon - -
-
ATH61p03852 LinkIcon - -
-
ATH61p04397 LinkIcon - -
-
ATH61p04401 LinkIcon - -
-
ATH63p01720 LinkIcon - -
-
ATH63p01979 LinkIcon - -
-
ATH63p02528 LinkIcon - -
-
ATH63p02794 LinkIcon - -
-
ATH63p02798 LinkIcon - -
-
8 adp014199 LinkIcon Positive ATH13p07388 LinkIcon PM018105 LinkIcon 1.000
Syringoylcholine 4-O-hexoside; MS2; Q-TOF; M+H; 15->55V
   Syringoylcholine 4-O-hexoside
  3,5-Dimethoxy-4-hexosyloxybenzoylcholine
ATH13p07905 LinkIcon PM018105 LinkIcon 0.976
Syringoylcholine 4-O-hexoside; MS2; Q-TOF; M+H; 15->55V
   Syringoylcholine 4-O-hexoside
  3,5-Dimethoxy-4-hexosyloxybenzoylcholine
ATH63p08500 LinkIcon PM018105 LinkIcon 0.970
Syringoylcholine 4-O-hexoside; MS2; Q-TOF; M+H; 15->55V
   Syringoylcholine 4-O-hexoside
  3,5-Dimethoxy-4-hexosyloxybenzoylcholine
ATH13p07612 LinkIcon PM018105 LinkIcon 0.966
Syringoylcholine 4-O-hexoside; MS2; Q-TOF; M+H; 15->55V
   Syringoylcholine 4-O-hexoside
  3,5-Dimethoxy-4-hexosyloxybenzoylcholine
ATH13p07905 LinkIcon PM008055 LinkIcon 0.930
Syringoylcholine 4-O-hexoside; MS2; QIT; M+Na; 15->55V
   Syringoylcholine 4-O-hexoside
  3,5-Dimethoxy-4-hexosyloxybenzoylcholine
ATH63p08500 LinkIcon PM008055 LinkIcon 0.919
Syringoylcholine 4-O-hexoside; MS2; QIT; M+Na; 15->55V
   Syringoylcholine 4-O-hexoside
  3,5-Dimethoxy-4-hexosyloxybenzoylcholine
ATH13p07905 LinkIcon PT101600 LinkIcon 0.917
3-Hydroxy-DL-kynurenine; MS2; Q-Tof; [M+H]+
   3-Hydroxy-DL-kynurenine
  DL-3-Hydroxykynurenine
  alpha,2-Diamino-3-hydroxy-gamma-oxobenzenebutanoic acid
  3-(3-hydroxyanthraniloyl)alanine
  2-amino-4-(2-amino-3-hydroxyphenyl)-4-oxobutanoic acid
ATH13p07612 LinkIcon PM008055 LinkIcon 0.915
Syringoylcholine 4-O-hexoside; MS2; QIT; M+Na; 15->55V
   Syringoylcholine 4-O-hexoside
  3,5-Dimethoxy-4-hexosyloxybenzoylcholine
ATH13p07388 LinkIcon PM008055 LinkIcon 0.911
Syringoylcholine 4-O-hexoside; MS2; QIT; M+Na; 15->55V
   Syringoylcholine 4-O-hexoside
  3,5-Dimethoxy-4-hexosyloxybenzoylcholine
ATH11p06376 LinkIcon - -
-
ATH11p06866 LinkIcon - -
-
ATH13p07908 LinkIcon - -
-
ATH61p07896 LinkIcon - -
-
ATH61p08311 LinkIcon - -
-
ATH63p08767 LinkIcon - -
-
9 adp034589 LinkIcon Positive ATH13p13547 LinkIcon - -
-
ATH14p12148 LinkIcon - -
-
ATH57p13447 LinkIcon - -
-
ATH61p15379 LinkIcon - -
-
ATH63p16711 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g48470
glutamine synthetase 1;5 Encodes cytosolic glutamine synthase isozyme. Expression of mRNA is not detectable in roots. glutamine synthetase 1;5 (GLN1;5); FUNCTIONS IN: glutamate-ammonia ligase activity; INVOLVED IN: nitrogen compound metabolic process, glutamine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic domain (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic domain (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: glutamine synthetase 1.3 (TAIR:AT3G17820.1); Has 9330 Blast hits to 9326 proteins in 3052 species: Archae - 119; Bacteria - 4578; Metazoa - 411; Fungi - 235; Plants - 1748; Viruses - 3; Other Eukaryotes - 2236 (source: NCBI BLink).
2
at1g71000
Chaperone DnaJ-domain superfamily protein - Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT1G56300.1); Has 22656 Blast hits to 22652 proteins in 3192 species: Archae - 173; Bacteria - 9479; Metazoa - 3801; Fungi - 1926; Plants - 2253; Viruses - 10; Other Eukaryotes - 5014 (source: NCBI BLink).
3
at2g19930
RNA-dependent RNA polymerase family protein - RNA-dependent RNA polymerase family protein; FUNCTIONS IN: RNA-directed RNA polymerase activity; INVOLVED IN: posttranscriptional gene silencing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase family protein (TAIR:AT2G19910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
4
at3g27870
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein - ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, ATP biosynthetic process, phospholipid transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G68710.1); Has 13753 Blast hits to 12595 proteins in 1702 species: Archae - 134; Bacteria - 4536; Metazoa - 3490; Fungi - 2070; Plants - 981; Viruses - 3; Other Eukaryotes - 2539 (source: NCBI BLink).
5
at4g12130
Glycine cleavage T-protein family - Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: glycine catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-binding, YgfZ (InterPro:IPR017703), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); Has 3767 Blast hits to 3765 proteins in 1151 species: Archae - 14; Bacteria - 1914; Metazoa - 108; Fungi - 149; Plants - 51; Viruses - 0; Other Eukaryotes - 1531 (source: NCBI BLink).
6
at4g21323
Subtilase family protein - Subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, pollen tube growth; LOCATED IN: endomembrane system; EXPRESSED IN: pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Peptidase S8, subtilisin-related (InterPro:IPR015500); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT4G10550.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
7
at4g22100
beta glucosidase 2 - beta glucosidase 2 (BGLU3); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G45191.2); Has 11206 Blast hits to 10915 proteins in 1473 species: Archae - 143; Bacteria - 7744; Metazoa - 687; Fungi - 200; Plants - 1442; Viruses - 0; Other Eukaryotes - 990 (source: NCBI BLink).
8
at5g17540
HXXXD-type acyl-transferase family protein - HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (TAIR:AT3G03480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
9
at5g23230
nicotinamidase 2 - nicotinamidase 2 (NIC2); CONTAINS InterPro DOMAIN/s: Isochorismatase-like (InterPro:IPR000868); BEST Arabidopsis thaliana protein match is: nicotinamidase 3 (TAIR:AT5G23220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
10
at5g65100
Ethylene insensitive 3 family protein - Ethylene insensitive 3 family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ethylene insensitive 3 (InterPro:IPR006957); BEST Arabidopsis thaliana protein match is: Ethylene insensitive 3 family protein (TAIR:AT5G10120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

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Integrated Genome Informatics Research Unit