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• Gene information ▼

1. Metabolite information

No.	AtMetExp ID	Polality	MS2T ID	ReSpect
				Accession	Score	Description
1	adn038043	Negative	ATH56n09123	PM018030	0.913	Putative glucosinolate; MS2; Q-TOF; M-H; 15->55V    Putative glucosinolate
			ATH56n10391	PM018030	0.912	Putative glucosinolate; MS2; Q-TOF; M-H; 15->55V    Putative glucosinolate
			ATH62n08758	PM018030	0.912	Putative glucosinolate; MS2; Q-TOF; M-H; 15->55V    Putative glucosinolate
			ATH63n09476	PM018030	0.911	Putative glucosinolate; MS2; Q-TOF; M-H; 15->55V    Putative glucosinolate
			ATH63n08458	PM018030	0.901	Putative glucosinolate; MS2; Q-TOF; M-H; 15->55V    Putative glucosinolate
			ATH06n05688	-	-	-
			ATH07n05744	-	-	-
			ATH07n05964	-	-	-
			ATH08n08220	-	-	-
			ATH08n08848	-	-	-
			ATH08n09025	-	-	-
			ATH09n08473	-	-	-
			ATH09n08676	-	-	-
			ATH10n05701	-	-	-
			ATH10n05906	-	-	-
			ATH11n05072	-	-	-
			ATH12n04344	-	-	-
			ATH12n04347	-	-	-
			ATH12n04683	-	-	-
			ATH13n07109	-	-	-
			ATH13n07794	-	-	-
			ATH14n07362	-	-	-
			ATH14n07365	-	-	-
			ATH14n07777	-	-	-
			ATH56n10137	-	-	-
			ATH57n09344	-	-	-
			ATH57n09823	-	-	-
			ATH57n10287	-	-	-
			ATH58n10524	-	-	-
			ATH59n09284	-	-	-
			ATH59n09776	-	-	-
			ATH59n10252	-	-	-
			ATH60n09647	-	-	-
			ATH60n09886	-	-	-
			ATH61n08185	-	-	-
			ATH61n09121	-	-	-
			ATH61n09126	-	-	-
			ATH62n08762	-	-	-
			ATH62n09228	-	-	-
			ATH62n09652	-	-	-
			ATH64n08895	-	-	-
			ATH64n09621	-	-	-
2	adp000492	Positive	-	-	-	-
3	adp017283	Positive	ATH13p09400	PM018110	1.000	Unknown PCE#1; MS2; Q-TOF; M+H; 15->55V    Unknown PCE#1
			ATH63p09558	PM018110	0.965	Unknown PCE#1; MS2; Q-TOF; M+H; 15->55V    Unknown PCE#1
			ATH63p10820	PM018110	0.965	Unknown PCE#1; MS2; Q-TOF; M+H; 15->55V    Unknown PCE#1
			ATH08p08158	PT112530	0.926	Calciferol; MS2; Q-Tof; [M+H]+    Calciferol   Vitamin D2   Ergocalciferol   Viosterin   Osteil   Viosterol   Ercalciol   Irradiated ergosterol   Condacaps   Condocaps   Condol   Crtron   Crystallina   Daral   (5Z,7E,22E)-(3S)-9,10-Secoergosta-5,7,10(19),22-tetraen-3-ol   Davitin   Deltalin   Deratol   Diactol   Drisdol   Ergorone   Ertron   Fortodyl   Geltabs   Hyperkil   Irradiated ergosta-5,7,22-trien-3-beta-ol   Metadee
			ATH07p07548	-	-	-
			ATH62p06624	-	-	-
4	adp019673	Positive	ATH13p09178	PS080101	0.975	L-beta-Homophenylalanine hydrochloride; MS2; QqQ; positive; CE 10 V    L-beta-Homophenylalanine hydrochloride   (S)-3-Amino-4-phenylbutyric acid hydrochloride
				PT101990	0.974	D-(+)-Glucosamine hydrochloride; MS2; Q-Tof; [M+H]+    D-(+)-Glucosamine hydrochloride   GlcN   2-Amino-2-deoxy-D-glucose hydrochloride   Chitosamine hydrochloride   Cosamin   (3R,4R,5S,6R)-3-amino-6-(hydroxymethyl)oxane-2,4,5-triol   Fusaric acid   Fusarate   Fusarinic acid   5-Butylpicolinic acid   5-butylpyridine-3-carboxylic acid
			ATH13p10050	PS080101	0.965	L-beta-Homophenylalanine hydrochloride; MS2; QqQ; positive; CE 10 V    L-beta-Homophenylalanine hydrochloride   (S)-3-Amino-4-phenylbutyric acid hydrochloride
			ATH13p09178	PS033801	0.964	S-Carboxymethyl-L-cysteine; MS2; QqQ; positive; CE 10 V    S-Carboxymethyl-L-cysteine   PSCMC   L-Carbocisteine   L-Carboxymethylcysteine   Mucodyne   D(+)-Galactosamine hydrochloride   2-Amino-3-deoxy-D-galactose Hydrochloride   D-Chondrosamine hydrochloride   (3R,4R,5R,6R)-3-amino-6-(hydroxymethyl)oxane-2,4,5-triol
			ATH13p10050	PS023201	0.964	Fusaric acid; MS2; QqQ; positive; CE 10 V    Fusaric acid   Fusarate   Fusarinic acid   5-Butylpicolinic acid   5-butylpyridine-3-carboxylic acid
				PT101990	0.963	D-(+)-Glucosamine hydrochloride; MS2; Q-Tof; [M+H]+    D-(+)-Glucosamine hydrochloride   GlcN   2-Amino-2-deoxy-D-glucose hydrochloride   Chitosamine hydrochloride   Cosamin   (3R,4R,5S,6R)-3-amino-6-(hydroxymethyl)oxane-2,4,5-triol
				PS033801	0.954	S-Carboxymethyl-L-cysteine; MS2; QqQ; positive; CE 10 V    S-Carboxymethyl-L-cysteine   PSCMC   L-Carbocisteine   L-Carboxymethylcysteine   Mucodyne
				PT100740	0.953	D(+)-Galactosamine hydrochloride; MS2; Q-Tof; [M+H]+    D(+)-Galactosamine hydrochloride   2-Amino-3-deoxy-D-galactose Hydrochloride   D-Chondrosamine hydrochloride   (3R,4R,5R,6R)-3-amino-6-(hydroxymethyl)oxane-2,4,5-triol
			ATH13p09178	PT101993	0.951	D-(+)-Glucosamine hydrochloride; MS2; Q-Tof; [M+H]+    D-(+)-Glucosamine hydrochloride   GlcN   2-Amino-2-deoxy-D-glucose hydrochloride   Chitosamine hydrochloride   Cosamin   (3R,4R,5S,6R)-3-amino-6-(hydroxymethyl)oxane-2,4,5-triol
			ATH13p10050	PT101993	0.941	D-(+)-Glucosamine hydrochloride; MS2; Q-Tof; [M+H]+    D-(+)-Glucosamine hydrochloride   GlcN   2-Amino-2-deoxy-D-glucose hydrochloride   Chitosamine hydrochloride   Cosamin   (3R,4R,5S,6R)-3-amino-6-(hydroxymethyl)oxane-2,4,5-triol
			ATH06p08135	-	-	-
			ATH08p08575	-	-	-
			ATH11p07869	-	-	-
			ATH12p08129	-	-	-
			ATH56p08369	-	-	-
			ATH58p10657	-	-	-
			ATH59p07583	-	-	-
			ATH62p07174	-	-	-
			ATH62p07580	-	-	-
			ATH63p10344	-	-	-
			ATH63p10595	-	-	-
			ATH63p11099	-	-	-

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2. Gene information

No.	ID	Short description	Curator summary	Computational description
1	at1g66650 eFP TAIR	Protein with RING/U-box and TRAF-like domains	-	Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT5G37930.1); Has 1538 Blast hits to 1533 proteins in 685 species: Archae - 0; Bacteria - 0; Metazoa - 1019; Fungi - 2; Plants - 466; Viruses - 2; Other Eukaryotes - 49 (source: NCBI BLink).
2	at1g77570 eFP TAIR	Winged helix-turn-helix transcription repressor DNA-binding	-	Winged helix-turn-helix transcription repressor DNA-binding; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G13980.1); Has 1245 Blast hits to 1235 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 256; Fungi - 110; Plants - 743; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
3	at3g05140 eFP TAIR	ROP binding protein kinases 2	-	ROP binding protein kinases 2 (RBK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G18910.1); Has 106611 Blast hits to 105596 proteins in 3392 species: Archae - 84; Bacteria - 12146; Metazoa - 38869; Fungi - 8564; Plants - 31291; Viruses - 415; Other Eukaryotes - 15242 (source: NCBI BLink).
4	at3g14360 eFP TAIR	alpha/beta-Hydrolases superfamily protein	-	alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G42930.1); Has 1400 Blast hits to 1392 proteins in 294 species: Archae - 0; Bacteria - 352; Metazoa - 56; Fungi - 304; Plants - 428; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).
5	at4g01970 eFP TAIR	stachyose synthase	Encodes a putative stachyose synthetase.	stachyose synthase (STS); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: Raffinose synthase family protein (TAIR:AT5G40390.1); Has 728 Blast hits to 457 proteins in 130 species: Archae - 54; Bacteria - 106; Metazoa - 0; Fungi - 85; Plants - 472; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
6	at4g24660 eFP TAIR	homeobox protein 22	-	homeobox protein 22 (HB22); CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 25 (TAIR:AT5G65410.1); Has 493 Blast hits to 471 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 490; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
7	at4g27250 eFP TAIR	NAD(P)-binding Rossmann-fold superfamily protein	-	NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: dihydroflavonol 4-reductase (TAIR:AT5G42800.1); Has 11174 Blast hits to 11160 proteins in 1934 species: Archae - 191; Bacteria - 4752; Metazoa - 248; Fungi - 837; Plants - 2457; Viruses - 63; Other Eukaryotes - 2626 (source: NCBI BLink).
8	at5g05550 eFP TAIR	sequence-specific DNA binding transcription factors	-	sequence-specific DNA binding transcription factors; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT3G11100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
9	at5g49990 eFP TAIR	Xanthine/uracil permease family protein	-	Xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil permease family protein (TAIR:AT5G62890.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

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RIKEN Center for Sustainable Resource Science
Integrated Genome Informatics Research Unit