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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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AGI locus IDs

Choosing cell X:" 5 " Y:" 3 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn028650 LinkIcon Negative ATH13n04758 LinkIcon PS119108 LinkIcon 0.977
Galactinol Dihydrate; MS2; QqQ; negative; CE 20 V
   Galactinol Dihydrate
  Gla+myo-inositol
  6beta-Galactinol
  1-O-alpha-D-Galactosyl-D-myo-inositol
PS020207 LinkIcon 0.971
D-(+)-Trehalose dihydrate,from Saccharomyces cerevisiae; MS2; QqQ; negative; CE 10 V
   D-(+)-Trehalose dihydrate,from Saccharomyces cerevisiae
  Glc(alpha1-1alpha)Glc
  alpha-alpha-Trehalose
  Mycose
  alpha-D-Glucopyranosyl-alpha-D-glucopyranoside dihydrate
PS006007 LinkIcon 0.968
Sucrose; MS2; QqQ; negative; CE 10 V
   Sucrose
  Suc
  Fru(beta2-1alpha)Glc
  D-(+)-Saccharose
  Cane sugar
  alpha-D-Glucopyranosyl beta-D-fructofuranoside
  Microse
PM003929 LinkIcon 0.955
6''-O-Hexosyl-C-hexosylmethylluteolin; MS2; QIT; M-H; 0.3->2V
   6''-O-Hexosyl-C-hexosylmethylluteolin
ATH13n05343 LinkIcon PS119108 LinkIcon 0.953
Galactinol Dihydrate; MS2; QqQ; negative; CE 20 V
   Galactinol Dihydrate
  Gla+myo-inositol
  6beta-Galactinol
  1-O-alpha-D-Galactosyl-D-myo-inositol
ATH13n04758 LinkIcon PM003803 LinkIcon 0.951
Kaempherol 3-O-beta-sophoroside; MS2; QIT; M-H; 0.3->2V
   Kaempherol 3-O-beta-sophoroside
PS119708 LinkIcon 0.949
Galactinol Dihydrate; MS2; QqQ; negative; CE 20 V
   Galactinol Dihydrate
  Gla+myo-inositol
  6beta-Galactinol
  1-O-alpha-D-Galactosyl-D-myo-inositol
ATH13n05343 LinkIcon PS020207 LinkIcon 0.937
D-(+)-Trehalose dihydrate,from Saccharomyces cerevisiae; MS2; QqQ; negative; CE 10 V
   D-(+)-Trehalose dihydrate,from Saccharomyces cerevisiae
  Glc(alpha1-1alpha)Glc
  alpha-alpha-Trehalose
  Mycose
  alpha-D-Glucopyranosyl-alpha-D-glucopyranoside dihydrate
ATH13n04758 LinkIcon PS006008 LinkIcon 0.936
Sucrose; MS2; QqQ; negative; CE 20 V
   Sucrose
  Suc
  Fru(beta2-1alpha)Glc
  D-(+)-Saccharose
  Cane sugar
  alpha-D-Glucopyranosyl beta-D-fructofuranoside
  Microse
ATH13n05343 LinkIcon PS006007 LinkIcon 0.935
Sucrose; MS2; QqQ; negative; CE 10 V
   Sucrose
  Suc
  Fru(beta2-1alpha)Glc
  D-(+)-Saccharose
  Cane sugar
  alpha-D-Glucopyranosyl beta-D-fructofuranoside
  Microse
ATH13n04940 LinkIcon PS119108 LinkIcon 0.926
Galactinol Dihydrate; MS2; QqQ; negative; CE 20 V
   Galactinol Dihydrate
  Gla+myo-inositol
  6beta-Galactinol
  1-O-alpha-D-Galactosyl-D-myo-inositol
ATH13n05343 LinkIcon PM003929 LinkIcon 0.922
6''-O-Hexosyl-C-hexosylmethylluteolin; MS2; QIT; M-H; 0.3->2V
   6''-O-Hexosyl-C-hexosylmethylluteolin
PS119708 LinkIcon 0.921
Galactinol Dihydrate; MS2; QqQ; negative; CE 20 V
   Galactinol Dihydrate
  Gla+myo-inositol
  6beta-Galactinol
  1-O-alpha-D-Galactosyl-D-myo-inositol
PM003803 LinkIcon 0.919
Kaempherol 3-O-beta-sophoroside; MS2; QIT; M-H; 0.3->2V
   Kaempherol 3-O-beta-sophoroside
  Sucrose
  Suc
  Fru(beta2-1alpha)Glc
  D-(+)-Saccharose
  Cane sugar
  alpha-D-Glucopyranosyl beta-D-fructofuranoside
  Microse
ATH13n04758 LinkIcon PM003907 LinkIcon 0.918
O-hexosyl-8-C-hexosyl-methylluteolin; MS2; QIT; M-H; 0.3->2V
   O-hexosyl-8-C-hexosyl-methylluteolin
ATH63n05920 LinkIcon PS058507 LinkIcon 0.917
D-Gluconic acid sodium salt; MS2; QqQ; negative; CE 10 V
   D-Gluconic acid sodium salt
  Sodium D-gluconate
  Glonsen
  Glucose Acid
  D-Gluco-hexonic acid
  2,3,4,5,6-Pentahydroxycaproic acid
ATH63n06387 LinkIcon PS119108 LinkIcon 0.915
Galactinol Dihydrate; MS2; QqQ; negative; CE 20 V
   Galactinol Dihydrate
  Gla+myo-inositol
  6beta-Galactinol
  1-O-alpha-D-Galactosyl-D-myo-inositol
ATH63n05920 LinkIcon PS102908 LinkIcon 0.913
1,3-Dimethylurate; MS2; QqQ; negative; CE 20 V
   1,3-Dimethylurate
  1,3-Dimethyluric acid
  1,3-Dimethyl-2,6,8-trihydroxypurine
  Oxytheophylline
ATH63n06387 LinkIcon PS006008 LinkIcon 0.912
Sucrose; MS2; QqQ; negative; CE 20 V
   Sucrose
  Suc
  Fru(beta2-1alpha)Glc
  D-(+)-Saccharose
  Cane sugar
  alpha-D-Glucopyranosyl beta-D-fructofuranoside
  Microse
PS119708 LinkIcon 0.911
Galactinol Dihydrate; MS2; QqQ; negative; CE 20 V
   Galactinol Dihydrate
  Gla+myo-inositol
  6beta-Galactinol
  1-O-alpha-D-Galactosyl-D-myo-inositol
ATH13n04940 LinkIcon PS006008 LinkIcon 0.906
Sucrose; MS2; QqQ; negative; CE 20 V
   Sucrose
  Suc
  Fru(beta2-1alpha)Glc
  D-(+)-Saccharose
  Cane sugar
  alpha-D-Glucopyranosyl beta-D-fructofuranoside
  Microse
PS119708 LinkIcon 0.903
Galactinol Dihydrate; MS2; QqQ; negative; CE 20 V
   Galactinol Dihydrate
  Gla+myo-inositol
  6beta-Galactinol
  1-O-alpha-D-Galactosyl-D-myo-inositol
PS020207 LinkIcon 0.901
D-(+)-Trehalose dihydrate,from Saccharomyces cerevisiae; MS2; QqQ; negative; CE 10 V
   D-(+)-Trehalose dihydrate,from Saccharomyces cerevisiae
  Glc(alpha1-1alpha)Glc
  alpha-alpha-Trehalose
  Mycose
  alpha-D-Glucopyranosyl-alpha-D-glucopyranoside dihydrate
ATH07n03392 LinkIcon - -
-
ATH12n02539 LinkIcon - -
-
ATH59n07008 LinkIcon - -
-
2 adp018559 LinkIcon Positive ATH12p07847 LinkIcon - -
-
ATH13p09411 LinkIcon - -
-
ATH13p10037 LinkIcon - -
-
ATH14p08959 LinkIcon - -
-
ATH14p09321 LinkIcon - -
-
ATH61p10385 LinkIcon - -
-
ATH64p10379 LinkIcon - -
-
ATH64p10836 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g71350
eukaryotic translation initiation factor SUI1 family protein - eukaryotic translation initiation factor SUI1 family protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Translation initiation factor SUI1 (InterPro:IPR001950), SWIB/MDM2 domain (InterPro:IPR003121), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (TAIR:AT1G09150.1); Has 1013 Blast hits to 993 proteins in 255 species: Archae - 62; Bacteria - 0; Metazoa - 354; Fungi - 333; Plants - 100; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).
2
at4g11140
cytokinin response factor 1 encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1). cytokinin response factor 1 (CRF1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 2 (TAIR:AT4G23750.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
3
at4g38780
Pre-mRNA-processing-splicing factor - Pre-mRNA-processing-splicing factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: spliceosomal complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding (InterPro:IPR019581), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding (InterPro:IPR019580), PROCN (InterPro:IPR012592), PRP8 domain IV core (InterPro:IPR021983), PRO, C-terminal (InterPro:IPR012984), RNA recognition motif, spliceosomal PrP8 (InterPro:IPR019582); BEST Arabidopsis thaliana protein match is: Pre-mRNA-processing-splicing factor (TAIR:AT1G80070.1); Has 803 Blast hits to 702 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 318; Fungi - 227; Plants - 60; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).
4
at5g25900
GA requiring 3 Encodes a member of the CYP701A cytochrome p450 family that is involved in later steps of the gibberellin biosynthetic pathway. GA requiring 3 (GA3); FUNCTIONS IN: oxygen binding; INVOLVED IN: gibberellin biosynthetic process, gibberellic acid mediated signaling pathway, ent-kaurene oxidation to kaurenoic acid; LOCATED IN: chloroplast outer membrane, endoplasmic reticulum, microsome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT5G07990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
5
at5g65890
ACT domain repeat 1 Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques. ACT domain repeat 1 (ACR1); FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain repeat 3 (TAIR:AT1G76990.5); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

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Integrated Genome Informatics Research Unit