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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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Polarity
Query M/Z
m/z tolerance ±
AtMetExpress peak IDs
MS2T IDs
ReSpect accessions

Choosing cell X:" 0 " Y:" 11 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn024453 LinkIcon Negative ATH63n03936 LinkIcon PS020207 LinkIcon 0.958
D-(+)-Trehalose dihydrate,from Saccharomyces cerevisiae; MS2; QqQ; negative; CE 10 V
   D-(+)-Trehalose dihydrate,from Saccharomyces cerevisiae
  Glc(alpha1-1alpha)Glc
  alpha-alpha-Trehalose
  Mycose
  alpha-D-Glucopyranosyl-alpha-D-glucopyranoside dihydrate
ATH58n05642 LinkIcon PS020207 LinkIcon 0.920
D-(+)-Trehalose dihydrate,from Saccharomyces cerevisiae; MS2; QqQ; negative; CE 10 V
   D-(+)-Trehalose dihydrate,from Saccharomyces cerevisiae
  Glc(alpha1-1alpha)Glc
  alpha-alpha-Trehalose
  Mycose
  alpha-D-Glucopyranosyl-alpha-D-glucopyranoside dihydrate
ATH58n04864 LinkIcon PS020207 LinkIcon 0.915
D-(+)-Trehalose dihydrate,from Saccharomyces cerevisiae; MS2; QqQ; negative; CE 10 V
   D-(+)-Trehalose dihydrate,from Saccharomyces cerevisiae
  Glc(alpha1-1alpha)Glc
  alpha-alpha-Trehalose
  Mycose
  alpha-D-Glucopyranosyl-alpha-D-glucopyranoside dihydrate
ATH63n04960 LinkIcon PS020207 LinkIcon 0.910
D-(+)-Trehalose dihydrate,from Saccharomyces cerevisiae; MS2; QqQ; negative; CE 10 V
   D-(+)-Trehalose dihydrate,from Saccharomyces cerevisiae
  Glc(alpha1-1alpha)Glc
  alpha-alpha-Trehalose
  Mycose
  alpha-D-Glucopyranosyl-alpha-D-glucopyranoside dihydrate
ATH06n02004 LinkIcon - -
-
ATH06n02359 LinkIcon - -
-
ATH07n02263 LinkIcon - -
-
ATH07n02268 LinkIcon - -
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ATH07n02641 LinkIcon - -
-
ATH08n04014 LinkIcon - -
-
ATH08n04281 LinkIcon - -
-
ATH08n04695 LinkIcon - -
-
ATH09n03995 LinkIcon - -
-
ATH10n02299 LinkIcon - -
-
ATH10n02304 LinkIcon - -
-
ATH10n02587 LinkIcon - -
-
ATH11n01755 LinkIcon - -
-
ATH11n02097 LinkIcon - -
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ATH12n01507 LinkIcon - -
-
ATH12n02103 LinkIcon - -
-
ATH13n03761 LinkIcon - -
-
ATH13n03934 LinkIcon - -
-
ATH14n03499 LinkIcon - -
-
ATH14n03502 LinkIcon - -
-
ATH14n04102 LinkIcon - -
-
ATH56n04590 LinkIcon - -
-
ATH56n05596 LinkIcon - -
-
ATH57n04581 LinkIcon - -
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ATH57n04585 LinkIcon - -
-
ATH57n05350 LinkIcon - -
-
ATH57n05353 LinkIcon - -
-
ATH59n04778 LinkIcon - -
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ATH59n05275 LinkIcon - -
-
ATH60n04485 LinkIcon - -
-
ATH60n04488 LinkIcon - -
-
ATH60n05502 LinkIcon - -
-
ATH61n04123 LinkIcon - -
-
ATH61n04748 LinkIcon - -
-
ATH62n04238 LinkIcon - -
-
ATH62n04944 LinkIcon - -
-
ATH63n04194 LinkIcon - -
-
ATH63n05205 LinkIcon - -
-
ATH64n04333 LinkIcon - -
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ATH64n05066 LinkIcon - -
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ATH64n05070 LinkIcon - -
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2 adn037319 LinkIcon Negative ATH06n05302 LinkIcon - -
-
ATH07n05227 LinkIcon - -
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ATH07n05931 LinkIcon - -
-
ATH08n08193 LinkIcon - -
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ATH08n08569 LinkIcon - -
-
ATH10n05226 LinkIcon - -
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ATH10n05873 LinkIcon - -
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ATH11n04280 LinkIcon - -
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ATH11n04854 LinkIcon - -
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ATH12n03942 LinkIcon - -
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ATH12n04483 LinkIcon - -
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ATH13n07556 LinkIcon - -
-
ATH13n08219 LinkIcon - -
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ATH14n06878 LinkIcon - -
-
ATH14n07513 LinkIcon - -
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ATH56n09599 LinkIcon - -
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ATH56n10358 LinkIcon - -
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ATH57n09064 LinkIcon - -
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ATH57n09790 LinkIcon - -
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ATH58n09481 LinkIcon - -
-
ATH58n10245 LinkIcon - -
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ATH59n09252 LinkIcon - -
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ATH59n09743 LinkIcon - -
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ATH60n08910 LinkIcon - -
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ATH60n09380 LinkIcon - -
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ATH60n09615 LinkIcon - -
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ATH61n08413 LinkIcon - -
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ATH61n09094 LinkIcon - -
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ATH62n08958 LinkIcon - -
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ATH62n09197 LinkIcon - -
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ATH63n08934 LinkIcon - -
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ATH63n09687 LinkIcon - -
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ATH64n08862 LinkIcon - -
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ATH64n09807 LinkIcon - -
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3 adn142466 LinkIcon Negative ATH57n20535 LinkIcon - -
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ATH59n20031 LinkIcon - -
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ATH59n20034 LinkIcon - -
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ATH60n19892 LinkIcon - -
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ATH62n18795 LinkIcon - -
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ATH64n18394 LinkIcon - -
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4 adn143903 LinkIcon Negative ATH57n20530 LinkIcon - -
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ATH59n20028 LinkIcon - -
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ATH60n19887 LinkIcon - -
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ATH61n19297 LinkIcon - -
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ATH64n18391 LinkIcon - -
-
5 adp003085 LinkIcon Positive ATH63p01956 LinkIcon PM018205 LinkIcon 0.955
8-(Methylsulfinyl)octanenitrile; MS2; Q-TOF; M+H; 15->55V
   8-(Methylsulfinyl)octanenitrile
ATH10p01375 LinkIcon PS068103 LinkIcon 0.920
sn-Glycero-3-phosphocholine 1:1 cadmium chloride adduct ; MS2; QqQ; positive; CE 30 V
   sn-Glycero-3-phosphocholine 1
  1 cadmium chloride adduct
  L-alpha-Glycerophosphorylcholine
  L-alpha-Glycerol Phosphorylcholine
  Choline Alphoscerate
ATH63p01949 LinkIcon PS063802 LinkIcon 0.910
L-2-Aminoadipic Acid ; MS2; QqQ; positive; CE 20 V
   L-2-Aminoadipic Acid
  L-Aad
  L-Ho-Glu
  L-2-Aminoadipate
  L-alpha-Aminoadipic Acid
  (S)-2-Aminohexanedioic acid
  L-Homoglutamic acid
  L-2-Aminohexanedioate
ATH07p02168 LinkIcon - -
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ATH09p01120 LinkIcon - -
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ATH10p01908 LinkIcon - -
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ATH13p01115 LinkIcon - -
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ATH14p00851 LinkIcon - -
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ATH14p01923 LinkIcon - -
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ATH59p01150 LinkIcon - -
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ATH63p01411 LinkIcon - -
-
ATH64p01953 LinkIcon - -
-
6 adp025796 LinkIcon Positive ATH09p09924 LinkIcon PT112580 LinkIcon 0.937
delta-Tocotrienol; MS2; Q-Tof; [M+H]+
   delta-Tocotrienol
  8-Methyltocotrienol
  (R)-delta-Tocotrienol
  (2R)-2,8-dimethyl-2-[(3E,7E)-4,8,12-trimethyltrideca-3,7,11-trienyl]chroman-6-ol
ATH09p09533 LinkIcon PT112580 LinkIcon 0.931
delta-Tocotrienol; MS2; Q-Tof; [M+H]+
   delta-Tocotrienol
  8-Methyltocotrienol
  (R)-delta-Tocotrienol
  (2R)-2,8-dimethyl-2-[(3E,7E)-4,8,12-trimethyltrideca-3,7,11-trienyl]chroman-6-ol
ATH11p09582 LinkIcon - -
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ATH13p12155 LinkIcon - -
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ATH14p10535 LinkIcon - -
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ATH14p10718 LinkIcon - -
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ATH14p10962 LinkIcon - -
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ATH14p11136 LinkIcon - -
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ATH57p10173 LinkIcon - -
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ATH58p12733 LinkIcon - -
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ATH58p12734 LinkIcon - -
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ATH59p11094 LinkIcon - -
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ATH59p11263 LinkIcon - -
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ATH61p12964 LinkIcon - -
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ATH61p13728 LinkIcon - -
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ATH62p10788 LinkIcon - -
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ATH63p10981 LinkIcon - -
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ATH64p13086 LinkIcon - -
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ATH64p13088 LinkIcon - -
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ATH64p13456 LinkIcon - -
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7 adp027469 LinkIcon Positive ATH13p12327 LinkIcon PS022802 LinkIcon 0.951
Etidronic acid; MS2; QqQ; positive; CE 20 V
   Etidronic acid
  HEDPA
  HEDP
  EHDP
  1-Hydroxyethane-1,1-diphosphonic Acid
  1-Hydroxyethylidenediphosphonic acid
  1,1,1-Ethanetriol diphosphonate
  Turpinal SL
ATH06p10208 LinkIcon - -
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ATH08p11031 LinkIcon - -
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ATH09p10115 LinkIcon - -
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ATH09p10336 LinkIcon - -
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ATH09p10532 LinkIcon - -
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ATH56p12172 LinkIcon - -
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ATH57p11719 LinkIcon - -
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ATH58p13179 LinkIcon - -
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ATH59p11440 LinkIcon - -
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ATH61p14232 LinkIcon - -
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ATH62p12032 LinkIcon - -
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2. Gene information

No. ID Short description Curator summary Computational description
1
at1g34040
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), EGF-like, alliinase (InterPro:IPR006947), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT1G34060.1); Has 290 Blast hits to 290 proteins in 68 species: Archae - 8; Bacteria - 67; Metazoa - 0; Fungi - 6; Plants - 199; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
2
at1g34060
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: carbon-sulfur lyase activity, pyridoxal phosphate binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), EGF-like, alliinase (InterPro:IPR006947), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT1G34040.1); Has 224 Blast hits to 224 proteins in 37 species: Archae - 6; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
3
at4g10380
NOD26-like intrinsic protein 5;1 Boric acid channel. Essential for efficient boron uptake and plant development under boron limitation. Also functions in arsenite transport and tolerance. Localized preferentially in outer membrane domains of root cells. NOD26-like intrinsic protein 5;1 (NIP5;1); CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NOD26-like intrinsic protein 6;1 (TAIR:AT1G80760.1); Has 10572 Blast hits to 10477 proteins in 2169 species: Archae - 110; Bacteria - 5205; Metazoa - 1362; Fungi - 448; Plants - 2368; Viruses - 0; Other Eukaryotes - 1079 (source: NCBI BLink).
4
at5g06510
nuclear factor Y, subunit A10 - "nuclear factor Y, subunit A10" (NF-YA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: stem, vascular tissue, embryo, leaf whorl, seed; EXPRESSED DURING: F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A2 (TAIR:AT3G05690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

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RIKEN Center for Sustainable Resource Science
Integrated Genome Informatics Research Unit