Home Gene search Metabolite search PRIMe
 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
 Highlight filters
Keyword
Polarity
Query M/Z
m/z tolerance ±
AtMetExpress peak IDs
MS2T IDs
ReSpect accessions

Choosing cell X:" 12 " Y:" 19 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn060434 LinkIcon Negative ATH06n09186 LinkIcon - -
-
ATH07n10671 LinkIcon - -
-
ATH09n12822 LinkIcon - -
-
ATH11n07900 LinkIcon - -
-
ATH12n07193 LinkIcon - -
-
ATH56n15458 LinkIcon - -
-
ATH57n15357 LinkIcon - -
-
ATH58n15595 LinkIcon - -
-
ATH59n15101 LinkIcon - -
-
ATH60n15292 LinkIcon - -
-
ATH61n14178 LinkIcon - -
-
ATH62n14378 LinkIcon - -
-
ATH63n15053 LinkIcon - -
-
2 adp023637 LinkIcon Positive ATH06p09730 LinkIcon PM018139 LinkIcon 0.995
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH06p09509 LinkIcon PM018139 LinkIcon 0.994
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH13p11404 LinkIcon PM018139 LinkIcon 0.993
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH08p10195 LinkIcon PM018139 LinkIcon 0.989
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH06p09733 LinkIcon PM018139 LinkIcon 0.986
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH08p09965 LinkIcon PM018139 LinkIcon 0.983
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH11p09120 LinkIcon PM018139 LinkIcon 0.981
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH13p11589 LinkIcon PM018139 LinkIcon 0.981
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH12p09007 LinkIcon PM018139 LinkIcon 0.977
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH14p10063 LinkIcon PM018139 LinkIcon 0.977
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH63p13311 LinkIcon PM018139 LinkIcon 0.977
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH11p09546 LinkIcon PM018139 LinkIcon 0.976
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH63p12589 LinkIcon PM018139 LinkIcon 0.976
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH56p10314 LinkIcon PM018139 LinkIcon 0.974
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH14p10497 LinkIcon PM018139 LinkIcon 0.972
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH56p11105 LinkIcon PM018139 LinkIcon 0.972
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH62p09970 LinkIcon PM018139 LinkIcon 0.971
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH64p12808 LinkIcon PM018139 LinkIcon 0.971
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH12p08619 LinkIcon PM018139 LinkIcon 0.969
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH62p09183 LinkIcon PM018139 LinkIcon 0.968
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH64p12811 LinkIcon PM018139 LinkIcon 0.968
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH58p12522 LinkIcon PM018139 LinkIcon 0.967
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH61p11880 LinkIcon PM018139 LinkIcon 0.967
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH61p12402 LinkIcon PM018139 LinkIcon 0.965
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH07p08492 LinkIcon PM018139 LinkIcon 0.964
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH58p11560 LinkIcon PM018139 LinkIcon 0.964
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH64p12166 LinkIcon PM018139 LinkIcon 0.955
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH59p09520 LinkIcon PM018139 LinkIcon 0.929
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH57p09345 LinkIcon PM018139 LinkIcon 0.922
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH59p10176 LinkIcon PM018139 LinkIcon 0.919
Isorhamnetin-3-rhamnoside-7-glucoside; MS2; Q-TOF; M+H; 15->55V
   Isorhamnetin-3-rhamnoside-7-glucoside
ATH06p09604 LinkIcon - -
-
ATH08p09962 LinkIcon - -
-
ATH08p10498 LinkIcon - -
-
ATH09p09038 LinkIcon - -
-
ATH09p09495 LinkIcon - -
-
ATH56p10311 LinkIcon - -
-
ATH56p10834 LinkIcon - -
-
ATH57p09872 LinkIcon - -
-
ATH57p10135 LinkIcon - -
-
ATH58p12258 LinkIcon - -
-
ATH61p12139 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g14150
PsbQ-like 2 Encodes a subunit of the NAD(P)H dehydrogenase complex located in the chloroplast thylakoid lumen. PsbQ-like 2 (PQL2); FUNCTIONS IN: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; INVOLVED IN: photosynthetic electron transport chain; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: photosystem II subunit Q-2 (TAIR:AT4G05180.1); Has 142 Blast hits to 142 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
2
at1g29660
GDSL-like Lipase/Acylhydrolase superfamily protein - GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: apoplast, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G29670.1); Has 3857 Blast hits to 3814 proteins in 365 species: Archae - 0; Bacteria - 608; Metazoa - 0; Fungi - 87; Plants - 3137; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
3
at1g73655
FKBP-like peptidyl-prolyl cis-trans isomerase family protein - FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G18170.1); Has 2070 Blast hits to 2058 proteins in 711 species: Archae - 0; Bacteria - 1307; Metazoa - 68; Fungi - 22; Plants - 368; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).
4
at2g28190
copper/zinc superoxide dismutase 2 Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. copper/zinc superoxide dismutase 2 (CSD2); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 1 (TAIR:AT1G08830.2); Has 4720 Blast hits to 4704 proteins in 1488 species: Archae - 6; Bacteria - 1989; Metazoa - 1257; Fungi - 323; Plants - 669; Viruses - 141; Other Eukaryotes - 335 (source: NCBI BLink).
5
at2g28900
outer plastid envelope protein 16-1 Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment. outer plastid envelope protein 16-1 (OEP16-1); FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: in 7 processes; LOCATED IN: chloroplast, plastid outer membrane, vacuole, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT4G16160.1); Has 150 Blast hits to 150 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
6
at3g01440
PsbQ-like 1 Encodes a subunit of the NAD(P)H complex located in the chloroplast thylakoid lumen. PsbQ-like 1 (PQL1); FUNCTIONS IN: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; INVOLVED IN: photosynthesis, light reaction, photosynthetic electron transport chain; LOCATED IN: in 7 components; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: photosystem II subunit QA (TAIR:AT4G21280.1); Has 165 Blast hits to 165 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
7
at3g14210
epithiospecifier modifier 1 A semidominant QTL which has an epistatic effect on the Epithiospecifier gene. Represses nitrile formation and favors isothiocyanate production during glucosinolate hydrolysis. The functional allele deters the insect herbivory T. ni. epithiospecifier modifier 1 (ESM1); FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glucosinolate catabolic process, response to cold, defense response to bacterium, response to insect; LOCATED IN: in 8 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: myrosinase-associated protein, putative (TAIR:AT1G54010.1); Has 1512 Blast hits to 1501 proteins in 69 species: Archae - 0; Bacteria - 44; Metazoa - 1; Fungi - 2; Plants - 1464; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
8
at3g47860
chloroplastic lipocalin Encodes a chloroplastic lipocalin AtCHL. Located in thylakoid lumen. Involved in the protection of thylakoidal membrane lipids against reactive oxygen species, especially singlet oxygen, produced upon excess light. chloroplastic lipocalin (CHL); FUNCTIONS IN: binding; INVOLVED IN: response to oxidative stress; LOCATED IN: thylakoid lumen, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipocalin-like (InterPro:IPR013208), Lipocalin conserved site (InterPro:IPR022272), Calycin (InterPro:IPR012674), Calycin-like (InterPro:IPR011038); Has 184 Blast hits to 184 proteins in 68 species: Archae - 0; Bacteria - 14; Metazoa - 66; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
9
at5g14740
carbonic anhydrase 2 Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform. carbonic anhydrase 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 1 (TAIR:AT3G01500.2); Has 5122 Blast hits to 5105 proteins in 1527 species: Archae - 36; Bacteria - 3955; Metazoa - 59; Fungi - 207; Plants - 361; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).

Creative Commons License
RIKEN Center for Sustainable Resource Science
Integrated Genome Informatics Research Unit