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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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1. Metabolite information

NO Data

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g14750
Cyclin family protein Encodes a meiotic cyclin-like protein, distinct from all other known Arabidopsis cyclins. It is not required for meiotic DSB formation but is necessary for meiotic DSB repair via the homologous chromosome. SOLO DANCERS (SDS); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: chiasma assembly, regulation of cell cycle, double-strand break repair via homologous recombination; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G06150.1); Has 3541 Blast hits to 3470 proteins in 348 species: Archae - 0; Bacteria - 40; Metazoa - 1630; Fungi - 464; Plants - 953; Viruses - 3; Other Eukaryotes - 451 (source: NCBI BLink).
2
at1g26630
Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection. FUMONISIN B1-RESISTANT12 (FBR12); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, IF5A, hypusine site (InterPro:IPR019769), Translation protein SH3-like, subgroup (InterPro:IPR014722), Translation elongation factor, IF5A (InterPro:IPR001884), Translation elongation factor, IF5A C-terminal (InterPro:IPR020189), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-3 (TAIR:AT1G69410.1); Has 1331 Blast hits to 1330 proteins in 409 species: Archae - 256; Bacteria - 0; Metazoa - 365; Fungi - 242; Plants - 261; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).
3
at1g48240
novel plant snare 12 member of NPSN Gene Family novel plant snare 12 (NPSN12); FUNCTIONS IN: protein transporter activity; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: novel plant snare 13 (TAIR:AT3G17440.1); Has 462 Blast hits to 462 proteins in 143 species: Archae - 6; Bacteria - 52; Metazoa - 98; Fungi - 25; Plants - 137; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).
4
at2g16400
BEL1-like homeodomain 7 - BEL1-like homeodomain 7 (BLH7); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 6 (TAIR:AT4G34610.2); Has 4799 Blast hits to 4799 proteins in 334 species: Archae - 0; Bacteria - 20; Metazoa - 1820; Fungi - 319; Plants - 2475; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).
5
at2g17970
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G36090.3); Has 213 Blast hits to 213 proteins in 60 species: Archae - 0; Bacteria - 4; Metazoa - 58; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
6
at2g20810
galacturonosyltransferase 10 Encodes a protein with putative galacturonosyltransferase activity. galacturonosyltransferase 10 (GAUT10); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 11 (TAIR:AT1G18580.1); Has 1414 Blast hits to 1410 proteins in 236 species: Archae - 0; Bacteria - 438; Metazoa - 146; Fungi - 0; Plants - 818; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
7
at2g21660
cold, circadian rhythm, and rna binding 2 Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). "cold, circadian rhythm, and rna binding 2" (CCR2); FUNCTIONS IN: double-stranded DNA binding, RNA binding, single-stranded DNA binding; INVOLVED IN: in 12 processes; LOCATED IN: nucleus, chloroplast, peroxisome, cytoplasm; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: cold, circadian rhythm, and RNA binding 1 (TAIR:AT4G39260.3); Has 548 Blast hits to 547 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 0; Plants - 453; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
8
at2g27060
Leucine-rich repeat protein kinase family protein - Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT5G10020.1); Has 117505 Blast hits to 68268 proteins in 2350 species: Archae - 92; Bacteria - 11270; Metazoa - 27205; Fungi - 2913; Plants - 66366; Viruses - 137; Other Eukaryotes - 9522 (source: NCBI BLink).
9
at2g30980
SHAGGY-related protein kinase dZeta Encodes a GSK3-like protein kinase. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts. SHAGGY-related protein kinase dZeta (SKdZeta); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: brassinosteroid mediated signaling pathway, protein amino acid phosphorylation, regulation of protein localization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: GSK3/SHAGGY-like protein kinase 1 (TAIR:AT1G06390.2); Has 110013 Blast hits to 108778 proteins in 3905 species: Archae - 83; Bacteria - 10808; Metazoa - 40209; Fungi - 11817; Plants - 28363; Viruses - 415; Other Eukaryotes - 18318 (source: NCBI BLink).
10
at2g38680
5'-nucleotidases;magnesium ion binding - 5'-nucleotidases;magnesium ion binding; FUNCTIONS IN: magnesium ion binding, 5'-nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IE (InterPro:IPR006434); Has 332 Blast hits to 332 proteins in 84 species: Archae - 4; Bacteria - 0; Metazoa - 264; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
11
at3g06440
Galactosyltransferase family protein - Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: galactosyltransferase1 (TAIR:AT1G26810.1); Has 2377 Blast hits to 2343 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 1703; Fungi - 5; Plants - 611; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
12
at3g07140
GPI transamidase component Gpi16 subunit family protein - GPI transamidase component Gpi16 subunit family protein; FUNCTIONS IN: GPI-anchor transamidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gpi16 subunit, GPI transamidase component (InterPro:IPR007245); Has 383 Blast hits to 363 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 131; Plants - 68; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
13
at3g29010
Biotin/lipoate A/B protein ligase family - Biotin/lipoate A/B protein ligase family; FUNCTIONS IN: catalytic activity; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Biotin/lipoate A/B protein ligase (InterPro:IPR004143); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
14
at4g08700
Drug/metabolite transporter superfamily protein Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. ATPUP13; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: purine permease 12 (TAIR:AT5G41160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
15
at4g10950
SGNH hydrolase-type esterase superfamily protein - SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT5G08460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
16
at4g15520
tRNA/rRNA methyltransferase (SpoU) family protein - tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 7549 Blast hits to 7548 proteins in 2062 species: Archae - 19; Bacteria - 6000; Metazoa - 86; Fungi - 2; Plants - 92; Viruses - 0; Other Eukaryotes - 1350 (source: NCBI BLink).
17
at5g17250
Alkaline-phosphatase-like family protein - Alkaline-phosphatase-like family protein; FUNCTIONS IN: transferase activity, catalytic activity; INVOLVED IN: GPI anchor biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT2G22530.1); Has 1431 Blast hits to 1201 proteins in 306 species: Archae - 0; Bacteria - 228; Metazoa - 476; Fungi - 488; Plants - 85; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).
18
at5g36230
ARM repeat superfamily protein - ARM repeat superfamily protein; FUNCTIONS IN: binding, translation initiation factor activity; INVOLVED IN: regulation of translational initiation; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G65220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
19
at5g41160
purine permease 12 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. purine permease 12 (PUP12); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Drug/metabolite transporter superfamily protein (TAIR:AT4G08700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
20
at5g65450
ubiquitin-specific protease 17 Encodes a ubiquitin-specific protease. ubiquitin-specific protease 17 (UBP17); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 16 (TAIR:AT4G24560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

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