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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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Query M/Z
m/z tolerance ±
AtMetExpress peak IDs
MS2T IDs
ReSpect accessions

Choosing cell X:" 18 " Y:" 4 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn098219 LinkIcon Negative ATH56n18433 LinkIcon - -
-
ATH57n18920 LinkIcon - -
-
ATH58n19022 LinkIcon - -
-
ATH58n19255 LinkIcon - -
-
ATH59n18892 LinkIcon - -
-
ATH62n17813 LinkIcon - -
-
2 adp005004 LinkIcon Positive ATH59p02738 LinkIcon PM018199 LinkIcon 0.945
Nicotinic acid; MS2; Q-TOF; M+H; 15->55V
   Nicotinic acid
ATH11p03467 LinkIcon PM010809 LinkIcon 0.940
N-Methylstylopine; MS2; QIT; M+H; 20->40V
   N-Methylstylopine
ATH57p03578 LinkIcon PS007601 LinkIcon 0.927
Nicotinic Acid; MS2; QqQ; positive; CE 10 V
   Nicotinic Acid
  Vitamin B3
  Niacin
  Nicotinate
  3-Picolinic acid
  Pyridine-3-carbonic acid
  Pellagra preventive factor
ATH59p03559 LinkIcon PM018199 LinkIcon 0.926
Nicotinic acid; MS2; Q-TOF; M+H; 15->55V
   Nicotinic acid
ATH58p02985 LinkIcon PS007601 LinkIcon 0.921
Nicotinic Acid; MS2; QqQ; positive; CE 10 V
   Nicotinic Acid
  Vitamin B3
  Niacin
  Nicotinate
  3-Picolinic acid
  Pyridine-3-carbonic acid
  Pellagra preventive factor
ATH56p03575 LinkIcon PS007601 LinkIcon 0.908
Nicotinic Acid; MS2; QqQ; positive; CE 10 V
   Nicotinic Acid
  Vitamin B3
  Niacin
  Nicotinate
  3-Picolinic acid
  Pyridine-3-carbonic acid
  Pellagra preventive factor
ATH06p02393 LinkIcon - -
-
ATH08p02918 LinkIcon - -
-
ATH08p03666 LinkIcon - -
-
ATH09p03167 LinkIcon - -
-
ATH10p03368 LinkIcon - -
-
ATH11p02679 LinkIcon - -
-
ATH14p02683 LinkIcon - -
-
ATH14p03207 LinkIcon - -
-
ATH61p04835 LinkIcon - -
-
ATH63p03567 LinkIcon - -
-
ATH64p02449 LinkIcon - -
-
ATH64p03256 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g61270
Transmembrane amino acid transporter family protein - Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT3G01760.1); Has 4440 Blast hits to 4407 proteins in 395 species: Archae - 7; Bacteria - 281; Metazoa - 1351; Fungi - 614; Plants - 1606; Viruses - 3; Other Eukaryotes - 578 (source: NCBI BLink).
2
at1g76090
sterol methyltransferase 3 Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway. sterol methyltransferase 3 (SMT3); CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: sterol methyltransferase 2 (TAIR:AT1G20330.1); Has 10191 Blast hits to 10184 proteins in 2043 species: Archae - 312; Bacteria - 6392; Metazoa - 125; Fungi - 424; Plants - 648; Viruses - 0; Other Eukaryotes - 2290 (source: NCBI BLink).
3
at2g45400
NAD(P)-binding Rossmann-fold superfamily protein involved in the regulation of brassinosteroid metabolic pathway BEN1; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, acting on CH-OH group of donors, binding, catalytic activity; INVOLVED IN: regulation of brassinosteroid biosynthetic process, brassinosteroid metabolic process, response to light intensity, flavonoid biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: dihydroflavonol 4-reductase (TAIR:AT5G42800.1); Has 8852 Blast hits to 8839 proteins in 1531 species: Archae - 135; Bacteria - 3285; Metazoa - 357; Fungi - 858; Plants - 2633; Viruses - 7; Other Eukaryotes - 1577 (source: NCBI BLink).
4
at2g46410
Homeodomain-like superfamily protein Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF. CAPRICE (CPC); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT5G53200.1); Has 2615 Blast hits to 2615 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2602; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
5
at3g01760
Transmembrane amino acid transporter family protein - Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT1G61270.1); Has 4381 Blast hits to 4371 proteins in 390 species: Archae - 5; Bacteria - 296; Metazoa - 1264; Fungi - 731; Plants - 1536; Viruses - 3; Other Eukaryotes - 546 (source: NCBI BLink).
6
at3g02100
UDP-Glycosyltransferase superfamily protein - UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G05675.1); Has 7982 Blast hits to 7880 proteins in 431 species: Archae - 0; Bacteria - 322; Metazoa - 2378; Fungi - 47; Plants - 5098; Viruses - 73; Other Eukaryotes - 64 (source: NCBI BLink).
7
at3g26760
NAD(P)-binding Rossmann-fold superfamily protein - NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G26770.1); Has 126181 Blast hits to 125932 proteins in 3632 species: Archae - 1003; Bacteria - 82375; Metazoa - 6104; Fungi - 6827; Plants - 2751; Viruses - 5; Other Eukaryotes - 27116 (source: NCBI BLink).
8
at4g11050
glycosyl hydrolase 9C3 - glycosyl hydrolase 9C3 (GH9C3); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C2 (TAIR:AT1G64390.1); Has 1895 Blast hits to 1880 proteins in 271 species: Archae - 2; Bacteria - 695; Metazoa - 181; Fungi - 19; Plants - 923; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
9
at4g28720
Flavin-binding monooxygenase family protein Auxin biosynthetic gene regulated by RVE1. Overexpression leads to suppression of bri1 phenotype. YUCCA 8 (YUC8); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: brassinosteroid mediated signaling pathway, auxin biosynthetic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G43890.1); Has 11557 Blast hits to 11539 proteins in 1628 species: Archae - 52; Bacteria - 6582; Metazoa - 787; Fungi - 1560; Plants - 663; Viruses - 0; Other Eukaryotes - 1913 (source: NCBI BLink).
10
at5g03150
C2H2-like zinc finger protein JKD is a nuclear-localized putative transcription factor with three zinc finger domains. jkd mutants show a number of root patterning defects including ectopic periclinal divisions in the cortex, increased cell numbers in the cortical and epidermal layers, a disrupted QC marker expression pattern, and disorganized QC and columella cells. jkd mutants also have a reduced number of meristematic cells in their roots. JKD can interact with the SCR and SHR proteins implicated in root patterning, as well as another zinc finger transcription factor, MAGPIE. All of these interactions require the first zinc finger in JKD according to a Y2H assay. There are also transcriptional interactions among these proteins. The initiation of JKD transcription does not appear to depend on SCR and SHR, but later expression in the post-embryonic QC cells and ground tissue initials is reduced in scr and shr mutants. JKD also appears to be required for SCR transcription beginning in the embryo. There is also some evidence that JKD plays a role in promoting the movement of SHR into the nucleus, particularly in QC cells, but this may be indirect. JACKDAW (JKD); FUNCTIONS IN: protein binding, protein homodimerization activity, sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of epidermal cell differentiation, regulation of meristem growth, regulation of cell division, root development, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G66730.1); Has 56579 Blast hits to 20803 proteins in 357 species: Archae - 0; Bacteria - 66; Metazoa - 49427; Fungi - 692; Plants - 856; Viruses - 6; Other Eukaryotes - 5532 (source: NCBI BLink).
11
at5g03510
C2H2-type zinc finger family protein - C2H2-type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT5G04390.1); Has 1636 Blast hits to 1504 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 699; Fungi - 0; Plants - 911; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
12
at5g53290
cytokinin response factor 3 encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. cytokinin response factor 3 (CRF3); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 4 (TAIR:AT4G27950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
13
at5g55170
small ubiquitin-like modifier 3 Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. small ubiquitin-like modifier 3 (SUMO3); CONTAINS InterPro DOMAIN/s: Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: small ubiquitin-like modifier 2 (TAIR:AT5G55160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
14
at5g56500
TCP-1/cpn60 chaperonin family protein - TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, protein refolding, cellular protein metabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G13470.1); Has 34404 Blast hits to 34375 proteins in 8725 species: Archae - 780; Bacteria - 22076; Metazoa - 1687; Fungi - 1649; Plants - 826; Viruses - 2; Other Eukaryotes - 7384 (source: NCBI BLink).

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Integrated Genome Informatics Research Unit