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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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AtMetExpress peak IDs
MS2T IDs
ReSpect accessions

Choosing cell X:" 19 " Y:" 3 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn041301 LinkIcon Negative ATH06n06769 LinkIcon PM018071 LinkIcon 0.978
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH14n08114 LinkIcon PM018071 LinkIcon 0.971
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH56n10894 LinkIcon PM018071 LinkIcon 0.968
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH10n06527 LinkIcon PM018071 LinkIcon 0.966
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH56n10632 LinkIcon PM018071 LinkIcon 0.965
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH14n08908 LinkIcon PM018071 LinkIcon 0.953
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH62n09851 LinkIcon PM018071 LinkIcon 0.950
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH07n07087 LinkIcon PM018071 LinkIcon 0.949
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH60n10827 LinkIcon PM018071 LinkIcon 0.948
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH62n10548 LinkIcon PM018071 LinkIcon 0.947
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH09n10144 LinkIcon PM018071 LinkIcon 0.945
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH56n11394 LinkIcon PM018071 LinkIcon 0.945
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH58n11796 LinkIcon PM018071 LinkIcon 0.944
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH58n11799 LinkIcon PM018071 LinkIcon 0.940
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH60n11312 LinkIcon PM018071 LinkIcon 0.939
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH57n11003 LinkIcon PM018071 LinkIcon 0.938
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH08n09771 LinkIcon PM018071 LinkIcon 0.935
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH64n10703 LinkIcon PM018071 LinkIcon 0.934
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH08n10236 LinkIcon PM018071 LinkIcon 0.928
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH14n08680 LinkIcon PM018076 LinkIcon 0.928
Guaiasylglycerol-beta-feruloyl ether-malonyl-isomer; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-malonyl-isomer
  F(4-O-b)G-malonyl-isomer
ATH08n09609 LinkIcon PM018071 LinkIcon 0.926
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH57n10528 LinkIcon PM018071 LinkIcon 0.923
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH07n07283 LinkIcon PM018071 LinkIcon 0.922
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH07n06903 LinkIcon PM018071 LinkIcon 0.920
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH57n11234 LinkIcon PM018071 LinkIcon 0.919
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH56n11391 LinkIcon PM018071 LinkIcon 0.916
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH64n10706 LinkIcon PM018070 LinkIcon 0.916
Guaiasylglycerol-beta-feruloyl ether related metabolite; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether related metabolite
  F(4-O-b)G related metabolite#4
ATH06n05858 LinkIcon PM018071 LinkIcon 0.911
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH59n11428 LinkIcon PM018071 LinkIcon 0.911
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH60n10349 LinkIcon PM018071 LinkIcon 0.911
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH62n11024 LinkIcon PM018071 LinkIcon 0.904
Guaiasylglycerol-beta-feruloyl ether-hexoside; MS2; Q-TOF; M-H; 15->55V
   Guaiasylglycerol-beta-feruloyl ether-hexoside
  F(4-O-b)G-hexoside
ATH06n06593 LinkIcon - -
-
ATH07n07287 LinkIcon - -
-
ATH08n09198 LinkIcon - -
-
ATH09n09291 LinkIcon - -
-
ATH09n10147 LinkIcon - -
-
ATH10n06652 LinkIcon - -
-
ATH10n07121 LinkIcon - -
-
ATH10n07342 LinkIcon - -
-
ATH12n05149 LinkIcon - -
-
ATH12n05273 LinkIcon - -
-
ATH12n05567 LinkIcon - -
-
ATH12n05570 LinkIcon - -
-
ATH14n08117 LinkIcon - -
-
ATH57n11747 LinkIcon - -
-
ATH58n10782 LinkIcon - -
-
ATH58n11034 LinkIcon - -
-
ATH59n10505 LinkIcon - -
-
ATH59n10508 LinkIcon - -
-
ATH59n11175 LinkIcon - -
-
ATH60n11060 LinkIcon - -
-
ATH61n09792 LinkIcon - -
-
ATH61n10017 LinkIcon - -
-
ATH61n10240 LinkIcon - -
-
ATH61n10499 LinkIcon - -
-
ATH62n09854 LinkIcon - -
-
ATH64n10014 LinkIcon - -
-
ATH64n10017 LinkIcon - -
-
2 adn088581 LinkIcon Negative ATH14n13238 LinkIcon PM009635 LinkIcon 0.978
Isorhamnetin 3-glucoside-7-glucoside; MS2; QIT; M-H; 0.3->2V
   Isorhamnetin 3-glucoside-7-glucoside
ATH60n17776 LinkIcon PS041907 LinkIcon 0.971
isorhamnetin-3-O-glucoside; MS2; QqQ; negative; CE 10 V
   isorhamnetin-3-O-glucoside
  Isor-3-Glc
  Isorhamnetin-3-beta-D-galactopyranoside
ATH62n17121 LinkIcon PS041907 LinkIcon 0.970
isorhamnetin-3-O-glucoside; MS2; QqQ; negative; CE 10 V
   isorhamnetin-3-O-glucoside
  Isor-3-Glc
  Isorhamnetin-3-beta-D-galactopyranoside
ATH64n16339 LinkIcon PS041907 LinkIcon 0.968
isorhamnetin-3-O-glucoside; MS2; QqQ; negative; CE 10 V
   isorhamnetin-3-O-glucoside
  Isor-3-Glc
  Isorhamnetin-3-beta-D-galactopyranoside
ATH57n18661 LinkIcon PS041907 LinkIcon 0.962
isorhamnetin-3-O-glucoside; MS2; QqQ; negative; CE 10 V
   isorhamnetin-3-O-glucoside
  Isor-3-Glc
  Isorhamnetin-3-beta-D-galactopyranoside
ATH09n15009 LinkIcon PM009635 LinkIcon 0.943
Isorhamnetin 3-glucoside-7-glucoside; MS2; QIT; M-H; 0.3->2V
   Isorhamnetin 3-glucoside-7-glucoside
ATH10n12336 LinkIcon - -
-
ATH10n12717 LinkIcon - -
-
ATH14n13241 LinkIcon - -
-
ATH59n18058 LinkIcon - -
-
ATH64n16343 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g10400
UDP-Glycosyltransferase superfamily protein - UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213), Tudor subgroup (InterPro:IPR018351); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT5G14860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
2
at1g23410
Ribosomal protein S27a / Ubiquitin family protein - Ribosomal protein S27a / Ubiquitin family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 6 (TAIR:AT2G47110.2); Has 12704 Blast hits to 7404 proteins in 782 species: Archae - 114; Bacteria - 22; Metazoa - 5540; Fungi - 1414; Plants - 3101; Viruses - 186; Other Eukaryotes - 2327 (source: NCBI BLink).
3
at1g50520
cytochrome P450, family 705, subfamily A, polypeptide 27 member of CYP705A "cytochrome P450, family 705, subfamily A, polypeptide 27" (CYP705A27); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 705, subfamily A, polypeptide 25 (TAIR:AT1G50560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
4
at1g69526
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G69523.1); Has 81 Blast hits to 75 proteins in 26 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
5
at2g45050
GATA transcription factor 2 Encodes a member of the GATA factor family of zinc finger transcription factors. GATA transcription factor 2 (GATA2); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 4 (TAIR:AT3G60530.1); Has 1635 Blast hits to 1600 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 636; Plants - 819; Viruses - 4; Other Eukaryotes - 67 (source: NCBI BLink).
6
at3g26610
Pectin lyase-like superfamily protein - Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G60590.1); Has 4342 Blast hits to 4315 proteins in 504 species: Archae - 6; Bacteria - 1404; Metazoa - 14; Fungi - 1284; Plants - 1492; Viruses - 2; Other Eukaryotes - 140 (source: NCBI BLink).
7
at3g55090
ABC-2 type transporter family protein - ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to cyclopentenone; LOCATED IN: membrane; EXPRESSED IN: sepal, root, flower, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT2G39350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
8
at4g14130
xyloglucan endotransglucosylase/hydrolase 15 xyloglucan endotransglycosylase-related protein (XTR7) xyloglucan endotransglucosylase/hydrolase 15 (XTH15); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: N-terminal protein myristoylation, carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 16 (TAIR:AT3G23730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
9
at5g15150
homeobox 3 homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem. homeobox 3 (HB-3); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 20 (TAIR:AT3G01220.1); Has 11268 Blast hits to 11217 proteins in 570 species: Archae - 0; Bacteria - 6; Metazoa - 8826; Fungi - 177; Plants - 2030; Viruses - 5; Other Eukaryotes - 224 (source: NCBI BLink).
10
at5g38280
PR5-like receptor kinase putative receptor serine/threonine kinase PR5K (PR5K) mRNA, PR5-like receptor kinase PR5-like receptor kinase (PR5K); FUNCTIONS IN: transmembrane receptor protein serine/threonine kinase activity, kinase activity; INVOLVED IN: response to fungus; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Thaumatin, conserved site (InterPro:IPR017949), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: receptor serine/threonine kinase, putative (TAIR:AT1G70250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
11
at5g52020
Integrase-type DNA-binding superfamily protein encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: defense response to fungus; LOCATED IN: chloroplast; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G12630.1); Has 5783 Blast hits to 5605 proteins in 247 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5767; Viruses - 2; Other Eukaryotes - 14 (source: NCBI BLink).
12
at5g57980
RNA polymerase II fifth largest subunit, C NRPB5-like protein of unknown function; homologous to budding yeast RPB5 "RNA polymerase II fifth largest subunit, C" (RPB5C); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, leaf whorl, sepal, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381); BEST Arabidopsis thaliana protein match is: Eukaryotic rpb5 RNA polymerase subunit family protein (TAIR:AT3G22320.1); Has 862 Blast hits to 862 proteins in 307 species: Archae - 143; Bacteria - 0; Metazoa - 161; Fungi - 219; Plants - 117; Viruses - 8; Other Eukaryotes - 214 (source: NCBI BLink).
13
at5g59490
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G02230.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

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RIKEN Center for Sustainable Resource Science
Integrated Genome Informatics Research Unit