Home Gene search Metabolite search PRIMe
 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
 Highlight filters
Keyword
Polarity
Query M/Z
m/z tolerance ±
AtMetExpress peak IDs
MS2T IDs
ReSpect accessions

Choosing cell X:" 1 " Y:" 17 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn063639 LinkIcon Negative ATH06n09902 LinkIcon - -
-
ATH06n09905 LinkIcon - -
-
ATH07n11240 LinkIcon - -
-
ATH08n13356 LinkIcon - -
-
ATH08n13359 LinkIcon - -
-
ATH09n13331 LinkIcon - -
-
ATH10n10548 LinkIcon - -
-
ATH10n10988 LinkIcon - -
-
ATH11n08151 LinkIcon - -
-
ATH12n07459 LinkIcon - -
-
ATH14n11792 LinkIcon - -
-
ATH56n15637 LinkIcon - -
-
ATH57n15816 LinkIcon - -
-
ATH57n15819 LinkIcon - -
-
ATH58n16041 LinkIcon - -
-
ATH58n16044 LinkIcon - -
-
ATH59n15543 LinkIcon - -
-
ATH59n15546 LinkIcon - -
-
ATH60n15488 LinkIcon - -
-
ATH60n15491 LinkIcon - -
-
ATH61n14621 LinkIcon - -
-
ATH62n14790 LinkIcon - -
-
ATH62n14793 LinkIcon - -
-
ATH63n15251 LinkIcon - -
-
2 adn063640 LinkIcon Negative ATH06n09905 LinkIcon - -
-
ATH07n11240 LinkIcon - -
-
ATH07n11697 LinkIcon - -
-
ATH08n13359 LinkIcon - -
-
ATH10n10988 LinkIcon - -
-
ATH11n08151 LinkIcon - -
-
ATH12n07459 LinkIcon - -
-
ATH56n15637 LinkIcon - -
-
ATH56n16086 LinkIcon - -
-
ATH57n15816 LinkIcon - -
-
ATH57n15819 LinkIcon - -
-
ATH58n16041 LinkIcon - -
-
ATH58n16044 LinkIcon - -
-
ATH59n15546 LinkIcon - -
-
ATH60n15488 LinkIcon - -
-
ATH60n15491 LinkIcon - -
-
ATH61n14621 LinkIcon - -
-
ATH62n14793 LinkIcon - -
-
ATH63n15255 LinkIcon - -
-
3 adn065244 LinkIcon Negative ATH06n09908 LinkIcon - -
-
ATH06n09911 LinkIcon - -
-
ATH07n11244 LinkIcon - -
-
ATH07n11246 LinkIcon - -
-
ATH08n13363 LinkIcon - -
-
ATH09n13337 LinkIcon - -
-
ATH09n13338 LinkIcon - -
-
ATH09n13720 LinkIcon - -
-
ATH10n10553 LinkIcon - -
-
ATH10n10989 LinkIcon - -
-
ATH11n08156 LinkIcon - -
-
ATH56n15641 LinkIcon - -
-
ATH56n15644 LinkIcon - -
-
ATH57n15820 LinkIcon - -
-
ATH57n15823 LinkIcon - -
-
ATH58n16046 LinkIcon - -
-
ATH58n16049 LinkIcon - -
-
ATH59n15551 LinkIcon - -
-
ATH59n15800 LinkIcon - -
-
ATH60n15495 LinkIcon - -
-
ATH60n16004 LinkIcon - -
-
ATH61n14624 LinkIcon - -
-
ATH61n14627 LinkIcon - -
-
ATH64n14651 LinkIcon - -
-
4 adn065246 LinkIcon Negative ATH06n09911 LinkIcon - -
-
ATH07n11246 LinkIcon - -
-
ATH08n13363 LinkIcon - -
-
ATH09n13338 LinkIcon - -
-
ATH10n10989 LinkIcon - -
-
ATH14n11804 LinkIcon - -
-
ATH56n15644 LinkIcon - -
-
ATH57n15823 LinkIcon - -
-
ATH58n16049 LinkIcon - -
-
ATH59n15551 LinkIcon - -
-
ATH60n15495 LinkIcon - -
-
ATH61n14627 LinkIcon - -
-
5 adp027603 LinkIcon Positive ATH58p13708 LinkIcon PS005601 LinkIcon 0.924
L-Tyrosine; MS2; QqQ; positive; CE 10 V
   L-Tyrosine
  L-Tyr
  (-)-alpha-Amino-p-hydroxyhydrocinnamic acid
  4-Hydroxyphenylalanine
  L-2-Amino-3-p-hydroxyphenylpropanoic acid
  (S)-2-Amino-3-(4-hydroxyphenyl)propionic acid
ATH08p10952 LinkIcon PS005601 LinkIcon 0.909
L-Tyrosine; MS2; QqQ; positive; CE 10 V
   L-Tyrosine
  L-Tyr
  (-)-alpha-Amino-p-hydroxyhydrocinnamic acid
  4-Hydroxyphenylalanine
  L-2-Amino-3-p-hydroxyphenylpropanoic acid
  (S)-2-Amino-3-(4-hydroxyphenyl)propionic acid
ATH59p10773 LinkIcon PT112530 LinkIcon 0.906
Calciferol; MS2; Q-Tof; [M+H]+
   Calciferol
  Vitamin D2
  Ergocalciferol
  Viosterin
  Osteil
  Viosterol
  Ercalciol
  Irradiated ergosterol
  Condacaps
  Condocaps
  Condol
  Crtron
  Crystallina
  Daral
  (5Z,7E,22E)-(3S)-9,10-Secoergosta-5,7,10(19),22-tetraen-3-ol
  Davitin
  Deltalin
  Deratol
  Diactol
  Drisdol
  Ergorone
  Ertron
  Fortodyl
  Geltabs
  Hyperkil
  Irradiated ergosta-5,7,22-trien-3-beta-ol
  Metadee
ATH56p11844 LinkIcon - -
-
ATH56p11847 LinkIcon - -
-
ATH58p12834 LinkIcon - -
-
ATH63p14216 LinkIcon - -
-
ATH63p14679 LinkIcon - -
-
ATH63p14931 LinkIcon - -
-
6 adp032344 LinkIcon Positive ATH11p11039 LinkIcon PS005201 LinkIcon 0.965
L-Leucine, (Cell Culture Reagent, Crystalline); MS2; QqQ; positive; CE 10 V
   L-Leucine, (Cell Culture Reagent, Crystalline)
  L-Leu
  L-2-Amino-4-methylvaleric Acid
  L-alpha-Aminoisocaproic acid
  (S)-2-Amino-4-methylpentanoic acid
ATH06p11429 LinkIcon - -
-
ATH08p11839 LinkIcon - -
-
ATH08p11842 LinkIcon - -
-
ATH56p13812 LinkIcon - -
-
ATH58p14670 LinkIcon - -
-
ATH61p15306 LinkIcon - -
-
ATH61p15571 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g05560
UDP-glucosyltransferase 75B1 A UDP-glucose transferase localized in the phragmoplast. It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. UGT1/UGT75B1 catalyzes the formation of the p-aminobenzoate-glucose ester in vitro and in vivo. It appears to be the enzyme predominantly responsible for pABA-Glc formation in Arabidopsis based on assays in leaves, flowers, and siliques. UDP-glucosyltransferase 75B1 (UGT75B1); CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 75B2 (TAIR:AT1G05530.1); Has 7961 Blast hits to 7890 proteins in 509 species: Archae - 0; Bacteria - 579; Metazoa - 2125; Fungi - 39; Plants - 5043; Viruses - 112; Other Eukaryotes - 63 (source: NCBI BLink).
2
at2g02000
glutamate decarboxylase 3 - glutamate decarboxylase 3 (GAD3); FUNCTIONS IN: calmodulin binding; INVOLVED IN: carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 4 (TAIR:AT2G02010.1); Has 2817 Blast hits to 2814 proteins in 863 species: Archae - 192; Bacteria - 1666; Metazoa - 146; Fungi - 354; Plants - 282; Viruses - 7; Other Eukaryotes - 170 (source: NCBI BLink).
3
at2g02010
glutamate decarboxylase 4 - glutamate decarboxylase 4 (GAD4); FUNCTIONS IN: calmodulin binding; INVOLVED IN: carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 3 (TAIR:AT2G02000.1); Has 2849 Blast hits to 2845 proteins in 876 species: Archae - 190; Bacteria - 1701; Metazoa - 147; Fungi - 354; Plants - 286; Viruses - 3; Other Eukaryotes - 168 (source: NCBI BLink).
4
at3g03480
acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase - acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (CHAT); CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G17540.1); Has 2522 Blast hits to 2511 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 44; Plants - 2476; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
5
at3g22910
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein - ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: calcium-transporting ATPase activity, calmodulin binding; INVOLVED IN: cation transport, calcium ion transport, metabolic process, ATP biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT3G63380.1); Has 44077 Blast hits to 34142 proteins in 3178 species: Archae - 842; Bacteria - 29879; Metazoa - 3977; Fungi - 2621; Plants - 2012; Viruses - 3; Other Eukaryotes - 4743 (source: NCBI BLink).
6
at3g59140
multidrug resistance-associated protein 14 member of MRP subfamily multidrug resistance-associated protein 14 (MRP14); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 6 (TAIR:AT3G21250.2); Has 673798 Blast hits to 360971 proteins in 4075 species: Archae - 12279; Bacteria - 544381; Metazoa - 13093; Fungi - 8967; Plants - 6941; Viruses - 21; Other Eukaryotes - 88116 (source: NCBI BLink).
7
at3g60160
multidrug resistance-associated protein 9 member of MRP subfamily multidrug resistance-associated protein 9 (MRP9); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to nematode; LOCATED IN: integral to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 15 (TAIR:AT3G60970.1); Has 679468 Blast hits to 355652 proteins in 3947 species: Archae - 12543; Bacteria - 548953; Metazoa - 12500; Fungi - 7906; Plants - 6622; Viruses - 19; Other Eukaryotes - 90925 (source: NCBI BLink).
8
at3g60970
multidrug resistance-associated protein 15 member of MRP subfamily multidrug resistance-associated protein 15 (MRP15); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 9 (TAIR:AT3G60160.1); Has 674327 Blast hits to 354415 proteins in 3954 species: Archae - 12129; Bacteria - 545946; Metazoa - 13182; Fungi - 8004; Plants - 6730; Viruses - 20; Other Eukaryotes - 88316 (source: NCBI BLink).
9
at4g14690
Chlorophyll A-B binding family protein Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis. EARLY LIGHT-INDUCIBLE PROTEIN 2 (ELIP2); BEST Arabidopsis thaliana protein match is: Chlorophyll A-B binding family protein (TAIR:AT3G22840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
10
at4g16730
terpene synthase 02 In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides downstream of the start codon leading to a frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present. terpene synthase 02 (TPS02); INVOLVED IN: metabolic process; EXPRESSED IN: sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase 03 (TAIR:AT4G16740.1); Has 1736 Blast hits to 1706 proteins in 177 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1730; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
11
at5g05340
Peroxidase superfamily protein - Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G58400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
12
at5g62730
Major facilitator superfamily protein - Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1:2 (TAIR:AT1G69850.1); Has 6918 Blast hits to 6790 proteins in 1275 species: Archae - 0; Bacteria - 3368; Metazoa - 483; Fungi - 402; Plants - 2165; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink).

Creative Commons License
RIKEN Center for Sustainable Resource Science
Integrated Genome Informatics Research Unit