Choosing cell X:" 26 " Y:" 10 "
1. Metabolite information
No. | AtMetExp ID | Polality | MS2T ID | ReSpect | ||
---|---|---|---|---|---|---|
Accession | Score | Description | ||||
1 |
adn042695
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Negative |
ATH64n10902
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PT207280
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0.950 |
UDP-Galactose disodium salt ; MS2; Q-Tof; [M-H]-
UDP-Galactose disodium salt ã UDP-Gal UDP-galactose Uridine-5'-diphosphogalactose disodium salt UDP-D-galactopyranose [[(2R,3S,4R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] [(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] hydrogen phosphate
|
ATH64n09958
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PT203680
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0.942 |
Uridine-5'-diphospho-glucose disodium salt; MS2; Q-Tof; [M-H]-
Uridine-5'-diphospho-glucose disodium salt UDPG UDP-Glc UDP-glucose Uridine-5'-diphospho-glucose UDP-glucopyranoside [[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] [(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] hydrogen phosphate
|
|||
ATH62n10976
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PT203680
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0.941 |
Uridine-5'-diphospho-glucose disodium salt; MS2; Q-Tof; [M-H]-
Uridine-5'-diphospho-glucose disodium salt UDPG UDP-Glc UDP-glucose Uridine-5'-diphospho-glucose UDP-glucopyranoside [[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] [(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] hydrogen phosphate
|
|||
ATH56n11087
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PT207280
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0.937 |
UDP-Galactose disodium salt ; MS2; Q-Tof; [M-H]-
UDP-Galactose disodium salt ã UDP-Gal UDP-galactose Uridine-5'-diphosphogalactose disodium salt UDP-D-galactopyranose [[(2R,3S,4R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] [(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] hydrogen phosphate
|
|||
ATH57n11437
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PT207280
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0.937 |
UDP-Galactose disodium salt ; MS2; Q-Tof; [M-H]-
UDP-Galactose disodium salt ã UDP-Gal UDP-galactose Uridine-5'-diphosphogalactose disodium salt UDP-D-galactopyranose [[(2R,3S,4R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] [(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] hydrogen phosphate
|
|||
ATH61n10184
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PS114307
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0.937 |
p-Coumaric acid; MS2; QqQ; negative; CE 10 V
p-Coumaric acid trans-4-Hydroxycinnamic acid
|
|||
ATH61n10443
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PT207280
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0.936 |
UDP-Galactose disodium salt ; MS2; Q-Tof; [M-H]-
UDP-Galactose disodium salt ã UDP-Gal UDP-galactose Uridine-5'-diphosphogalactose disodium salt UDP-D-galactopyranose [[(2R,3S,4R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] [(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] hydrogen phosphate
|
|||
ATH57n10470
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PT207280
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0.924 |
UDP-Galactose disodium salt ; MS2; Q-Tof; [M-H]-
UDP-Galactose disodium salt ã UDP-Gal UDP-galactose Uridine-5'-diphosphogalactose disodium salt UDP-D-galactopyranose [[(2R,3S,4R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] [(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] hydrogen phosphate
|
|||
ATH12n05356
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PS114307
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0.915 |
p-Coumaric acid; MS2; QqQ; negative; CE 10 V
p-Coumaric acid trans-4-Hydroxycinnamic acid
|
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ATH06n06002
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- | - |
-
|
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ATH06n06340
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- | - |
-
|
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ATH06n06534
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- | - |
-
|
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ATH07n06588
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- | - |
-
|
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ATH07n07229
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- | - |
-
|
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ATH07n07495
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- | - |
-
|
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ATH08n09137
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- | - |
-
|
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ATH08n09571
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- | - |
-
|
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ATH08n09966
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- | - |
-
|
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ATH09n09235
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- | - |
-
|
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ATH09n09842
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- | - |
-
|
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ATH10n06494
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- | - |
-
|
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ATH10n07290
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- | - |
-
|
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ATH11n05334
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- | - |
-
|
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ATH11n05976
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- | - |
-
|
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ATH11n06143
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- | - |
-
|
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ATH12n04935
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- | - |
-
|
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ATH12n04938
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- | - |
-
|
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ATH12n05357
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- | - |
-
|
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ATH12n05526
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- | - |
-
|
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ATH13n08817
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- | - |
-
|
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ATH13n08986
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- | - |
-
|
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ATH14n08057
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- | - |
-
|
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ATH14n08061
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- | - |
-
|
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ATH14n08622
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- | - |
-
|
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ATH14n08625
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- | - |
-
|
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ATH56n11820
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- | - |
-
|
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ATH57n10467
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- | - |
-
|
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ATH57n11176
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- | - |
-
|
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ATH58n11232
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- | - |
-
|
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ATH58n11998
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- | - |
-
|
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ATH59n10444
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- | - |
-
|
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ATH59n10447
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- | - |
-
|
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ATH60n10289
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- | - |
-
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ATH60n11003
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- | - |
-
|
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ATH61n09486
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- | - |
-
|
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ATH61n09487
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- | - |
-
|
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ATH62n09792
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- | - |
-
|
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ATH62n10047
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- | - |
-
|
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ATH62n10975
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- | - |
-
|
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ATH63n10406
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- | - |
-
|
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ATH63n10650
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- | - |
-
|
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ATH64n09954
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- | - |
-
|
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2 |
adn086494
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Negative |
ATH09n15196
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- | - |
-
|
ATH13n14834
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- | - |
-
|
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ATH56n17913
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- | - |
-
|
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ATH58n18496
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- | - |
-
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ATH59n17761
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- | - |
-
|
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ATH64n16527
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- | - |
-
|
2. Gene information
No. | ID | Short description | Curator summary | Computational description |
---|---|---|---|---|
1 |
at1g02500
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S-adenosylmethionine synthetase 1 | encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity. | S-adenosylmethionine synthetase 1 (SAM1); FUNCTIONS IN: methionine adenosyltransferase activity; INVOLVED IN: response to cadmium ion, response to salt stress, ethylene biosynthetic process, S-adenosylmethionine biosynthetic process; LOCATED IN: cell wall, plasma membrane, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133), S-adenosylmethionine synthetase superfamily (InterPro:IPR022636), S-adenosylmethionine synthetase, N-terminal (InterPro:IPR022628), S-adenosylmethionine synthetase, C-terminal (InterPro:IPR022630), S-adenosylmethionine synthetase, conserved site (InterPro:IPR022631), S-adenosylmethionine synthetase, central domain (InterPro:IPR022629); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase 2 (TAIR:AT4G01850.2); Has 10905 Blast hits to 10897 proteins in 2898 species: Archae - 12; Bacteria - 5497; Metazoa - 373; Fungi - 167; Plants - 706; Viruses - 1; Other Eukaryotes - 4149 (source: NCBI BLink). |
2 |
at1g15950
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cinnamoyl coa reductase 1 | Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis. | cinnamoyl coa reductase 1 (CCR1); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1); Has 12077 Blast hits to 12065 proteins in 1900 species: Archae - 220; Bacteria - 5385; Metazoa - 413; Fungi - 986; Plants - 2545; Viruses - 54; Other Eukaryotes - 2474 (source: NCBI BLink). |
3 |
at1g22410
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Class-II DAHP synthetase family protein | - | Class-II DAHP synthetase family protein; FUNCTIONS IN: 3-deoxy-7-phosphoheptulonate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase, class II (InterPro:IPR002480); BEST Arabidopsis thaliana protein match is: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (TAIR:AT4G39980.1); Has 3811 Blast hits to 3796 proteins in 685 species: Archae - 0; Bacteria - 1237; Metazoa - 0; Fungi - 110; Plants - 171; Viruses - 0; Other Eukaryotes - 2293 (source: NCBI BLink). |
4 |
at1g55810
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uridine kinase-like 3 | One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively. | uridine kinase-like 3 (UKL3); FUNCTIONS IN: uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: uridine kinase-like 4 (TAIR:AT4G26510.2); Has 12937 Blast hits to 12923 proteins in 2615 species: Archae - 215; Bacteria - 9909; Metazoa - 552; Fungi - 508; Plants - 588; Viruses - 2; Other Eukaryotes - 1163 (source: NCBI BLink). |
5 |
at2g26800
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Aldolase superfamily protein | - | Aldolase superfamily protein; FUNCTIONS IN: hydroxymethylglutaryl-CoA lyase activity, catalytic activity; INVOLVED IN: leucine metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Pyruvate carboxyltransferase (InterPro:IPR000891); BEST Arabidopsis thaliana protein match is: 2-isopropylmalate synthase 2 (TAIR:AT5G23020.1); Has 10820 Blast hits to 10806 proteins in 2215 species: Archae - 426; Bacteria - 7058; Metazoa - 235; Fungi - 307; Plants - 196; Viruses - 0; Other Eukaryotes - 2598 (source: NCBI BLink). |
6 |
at2g36880
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methionine adenosyltransferase 3 | - | methionine adenosyltransferase 3 (MAT3); FUNCTIONS IN: copper ion binding, methionine adenosyltransferase activity; INVOLVED IN: one-carbon metabolic process, S-adenosylmethionine biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133), S-adenosylmethionine synthetase superfamily (InterPro:IPR022636), S-adenosylmethionine synthetase, N-terminal (InterPro:IPR022628), S-adenosylmethionine synthetase, C-terminal (InterPro:IPR022630), S-adenosylmethionine synthetase, conserved site (InterPro:IPR022631), S-adenosylmethionine synthetase, central domain (InterPro:IPR022629); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase family protein (TAIR:AT3G17390.1); Has 10904 Blast hits to 10897 proteins in 2898 species: Archae - 12; Bacteria - 5503; Metazoa - 373; Fungi - 167; Plants - 705; Viruses - 1; Other Eukaryotes - 4143 (source: NCBI BLink). |
7 |
at3g21230
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4-coumarate:CoA ligase 5 | The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo. | 4-coumarate:CoA ligase 5 (4CL5); CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4-coumarate:CoA ligase 2 (TAIR:AT3G21240.1); Has 86695 Blast hits to 79061 proteins in 3832 species: Archae - 1152; Bacteria - 55057; Metazoa - 3672; Fungi - 4648; Plants - 2823; Viruses - 1; Other Eukaryotes - 19342 (source: NCBI BLink). |
8 |
at3g49880
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glycosyl hydrolase family protein 43 | - | glycosyl hydrolase family protein 43; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 43 (InterPro:IPR006710); BEST Arabidopsis thaliana protein match is: Arabinanase/levansucrase/invertase (TAIR:AT5G67540.2); Has 1254 Blast hits to 1248 proteins in 224 species: Archae - 2; Bacteria - 1011; Metazoa - 1; Fungi - 133; Plants - 55; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). |
9 |
at3g49930
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C2H2 and C2HC zinc fingers superfamily protein | - | C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc-finger protein 1 (TAIR:AT5G67450.1); Has 7854 Blast hits to 5480 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 6758; Fungi - 30; Plants - 847; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink). |
10 |
at4g01850
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S-adenosylmethionine synthetase 2 | - | S-adenosylmethionine synthetase 2 (SAM-2); FUNCTIONS IN: copper ion binding, methionine adenosyltransferase activity; INVOLVED IN: one-carbon metabolic process, S-adenosylmethionine biosynthetic process; LOCATED IN: nucleolus, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133), S-adenosylmethionine synthetase superfamily (InterPro:IPR022636), S-adenosylmethionine synthetase, N-terminal (InterPro:IPR022628), S-adenosylmethionine synthetase, C-terminal (InterPro:IPR022630), S-adenosylmethionine synthetase, conserved site (InterPro:IPR022631), S-adenosylmethionine synthetase, central domain (InterPro:IPR022629); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase 1 (TAIR:AT1G02500.2); Has 10906 Blast hits to 10898 proteins in 2898 species: Archae - 12; Bacteria - 5497; Metazoa - 373; Fungi - 167; Plants - 706; Viruses - 1; Other Eukaryotes - 4150 (source: NCBI BLink). |
11 |
at5g54160
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O-methyltransferase 1 | A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3・O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3・methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase | O-methyltransferase 1 (OMT1); FUNCTIONS IN: myricetin 3'-O-methyltransferase activity, quercetin 3-O-methyltransferase activity, caffeate O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process, flavonol biosynthetic process; LOCATED IN: cytosol, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G77520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
Integrated Genome Informatics Research Unit