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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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Polarity
Query M/Z
m/z tolerance ±
AtMetExpress peak IDs
MS2T IDs
ReSpect accessions

Choosing cell X:" 28 " Y:" 18 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn042443 LinkIcon Negative ATH06n06783 LinkIcon PM003937 LinkIcon 0.982
O-hexosyl-2''-O-pentosyl-6-C-hexosylapigenin; MS2; QIT; M-H; 0.3->2V
   O-hexosyl-2''-O-pentosyl-6-C-hexosylapigenin
ATH11n06035 LinkIcon PM018042 LinkIcon 0.975
Kaempferol-3-arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Kaempferol-3-arabinoside-7-rhamnoside
ATH10n07131 LinkIcon PM018042 LinkIcon 0.971
Kaempferol-3-arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Kaempferol-3-arabinoside-7-rhamnoside
ATH06n06599 LinkIcon PM018042 LinkIcon 0.969
Kaempferol-3-arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Kaempferol-3-arabinoside-7-rhamnoside
ATH08n09207 LinkIcon PM018042 LinkIcon 0.968
Kaempferol-3-arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Kaempferol-3-arabinoside-7-rhamnoside
ATH61n10505 LinkIcon PM018042 LinkIcon 0.965
Kaempferol-3-arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Kaempferol-3-arabinoside-7-rhamnoside
ATH13n08868 LinkIcon PM003937 LinkIcon 0.934
O-hexosyl-2''-O-pentosyl-6-C-hexosylapigenin; MS2; QIT; M-H; 0.3->2V
   O-hexosyl-2''-O-pentosyl-6-C-hexosylapigenin
ATH07n07789 LinkIcon PM003937 LinkIcon 0.926
O-hexosyl-2''-O-pentosyl-6-C-hexosylapigenin; MS2; QIT; M-H; 0.3->2V
   O-hexosyl-2''-O-pentosyl-6-C-hexosylapigenin
ATH57n11498 LinkIcon PM018042 LinkIcon 0.920
Kaempferol-3-arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Kaempferol-3-arabinoside-7-rhamnoside
ATH09n09543 LinkIcon PM018042 LinkIcon 0.916
Kaempferol-3-arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Kaempferol-3-arabinoside-7-rhamnoside
ATH56n11650 LinkIcon PM018042 LinkIcon 0.916
Kaempferol-3-arabinoside-7-rhamnoside; MS2; Q-TOF; M-H; 15->55V
   Kaempferol-3-arabinoside-7-rhamnoside
ATH06n05869 LinkIcon - -
-
ATH07n06661 LinkIcon - -
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ATH07n07792 LinkIcon - -
-
ATH08n09445 LinkIcon - -
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ATH08n10245 LinkIcon - -
-
ATH09n09546 LinkIcon - -
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ATH09n09902 LinkIcon - -
-
ATH11n05711 LinkIcon - -
-
ATH12n05710 LinkIcon - -
-
ATH56n11152 LinkIcon - -
-
ATH56n11890 LinkIcon - -
-
ATH57n10792 LinkIcon - -
-
ATH57n10795 LinkIcon - -
-
ATH58n11045 LinkIcon - -
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ATH58n11549 LinkIcon - -
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ATH58n12068 LinkIcon - -
-
ATH59n10752 LinkIcon - -
-
ATH59n11439 LinkIcon - -
-
ATH60n10605 LinkIcon - -
-
ATH60n11068 LinkIcon - -
-
ATH61n09554 LinkIcon - -
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ATH61n09806 LinkIcon - -
-
ATH62n09861 LinkIcon - -
-
ATH62n10336 LinkIcon - -
-
ATH62n10558 LinkIcon - -
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ATH62n10561 LinkIcon - -
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ATH62n10815 LinkIcon - -
-
ATH63n10225 LinkIcon - -
-
ATH63n11235 LinkIcon - -
-
2 adn044203 LinkIcon Negative ATH06n06604 LinkIcon - -
-
ATH06n06942 LinkIcon - -
-
ATH07n07561 LinkIcon - -
-
ATH07n08013 LinkIcon - -
-
ATH07n08277 LinkIcon - -
-
ATH07n08502 LinkIcon - -
-
ATH08n10036 LinkIcon - -
-
ATH08n10246 LinkIcon - -
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ATH08n10680 LinkIcon - -
-
ATH09n10159 LinkIcon - -
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ATH09n10806 LinkIcon - -
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ATH09n10994 LinkIcon - -
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ATH10n06887 LinkIcon - -
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ATH10n07540 LinkIcon - -
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ATH12n05715 LinkIcon - -
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ATH13n09289 LinkIcon - -
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ATH13n09502 LinkIcon - -
-
ATH13n09710 LinkIcon - -
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ATH13n09946 LinkIcon - -
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ATH14n08690 LinkIcon - -
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ATH56n11655 LinkIcon - -
-
ATH56n12118 LinkIcon - -
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ATH57n11503 LinkIcon - -
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ATH57n12279 LinkIcon - -
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ATH58n12828 LinkIcon - -
-
ATH59n11687 LinkIcon - -
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ATH59n11932 LinkIcon - -
-
ATH59n12427 LinkIcon - -
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ATH60n11326 LinkIcon - -
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ATH60n11818 LinkIcon - -
-
ATH60n11820 LinkIcon - -
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ATH61n11237 LinkIcon - -
-
ATH62n11035 LinkIcon - -
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ATH62n11259 LinkIcon - -
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ATH63n10979 LinkIcon - -
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ATH63n11495 LinkIcon - -
-
ATH64n11205 LinkIcon - -
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ATH64n11921 LinkIcon - -
-
3 adp003051 LinkIcon Positive ATH64p02223 LinkIcon PM018205 LinkIcon 0.997
8-(Methylsulfinyl)octanenitrile; MS2; Q-TOF; M+H; 15->55V
   8-(Methylsulfinyl)octanenitrile
ATH63p00884 LinkIcon PM018205 LinkIcon 0.954
8-(Methylsulfinyl)octanenitrile; MS2; Q-TOF; M+H; 15->55V
   8-(Methylsulfinyl)octanenitrile
ATH07p01119 LinkIcon PS071901 LinkIcon 0.907
L-(+)-Lysine; MS2; QqQ; positive; CE 10 V
   L-(+)-Lysine
  Lys
  Lysine acid
  2,6-diaminohexanoic acid
4 adp003625 LinkIcon Positive ATH08p02185 LinkIcon - -
-
ATH12p01911 LinkIcon - -
-
ATH12p02691 LinkIcon - -
-
ATH14p02200 LinkIcon - -
-
ATH62p01700 LinkIcon - -
-
ATH64p01694 LinkIcon - -
-
5 adp005623 LinkIcon Positive ATH13p03223 LinkIcon PM018093 LinkIcon 0.967
Sinapoylcholine dimer-isomer; MS2; Q-TOF; M+H; 15->55V
   Sinapoylcholine dimer-isomer
ATH13p04217 LinkIcon PM018094 LinkIcon 0.965
Sinapoylcholine dimer-isomer; MS2; Q-TOF; M+H; 15->55V
   Sinapoylcholine dimer-isomer
ATH13p03953 LinkIcon PM018094 LinkIcon 0.962
Sinapoylcholine dimer-isomer; MS2; Q-TOF; M+H; 15->55V
   Sinapoylcholine dimer-isomer
ATH63p03287 LinkIcon PM018094 LinkIcon 0.959
Sinapoylcholine dimer-isomer; MS2; Q-TOF; M+H; 15->55V
   Sinapoylcholine dimer-isomer
ATH11p04105 LinkIcon PM018093 LinkIcon 0.958
Sinapoylcholine dimer-isomer; MS2; Q-TOF; M+H; 15->55V
   Sinapoylcholine dimer-isomer
ATH08p03501 LinkIcon PM018564 LinkIcon 0.950
5-Feruloylquinic acids; MS2; QqQ; M+H; 30eV
   5-Feruloylquinic acids
  Cyclohexanecarboxylic acid, 1,3,4-trihydroxy-5-[[3-(4-hydroxy-3-methoxyphenyl)-1-oxo-2-propen-1-yl]oxy]-, (1R,3R,4S,5R)-
ATH13p03484 LinkIcon PM018094 LinkIcon 0.947
Sinapoylcholine dimer-isomer; MS2; Q-TOF; M+H; 15->55V
   Sinapoylcholine dimer-isomer
ATH63p04072 LinkIcon PM018094 LinkIcon 0.945
Sinapoylcholine dimer-isomer; MS2; Q-TOF; M+H; 15->55V
   Sinapoylcholine dimer-isomer
ATH63p04075 LinkIcon PM018094 LinkIcon 0.936
Sinapoylcholine dimer-isomer; MS2; Q-TOF; M+H; 15->55V
   Sinapoylcholine dimer-isomer
ATH06p04126 LinkIcon PM018564 LinkIcon 0.906
5-Feruloylquinic acids; MS2; QqQ; M+H; 30eV
   5-Feruloylquinic acids
  Cyclohexanecarboxylic acid, 1,3,4-trihydroxy-5-[[3-(4-hydroxy-3-methoxyphenyl)-1-oxo-2-propen-1-yl]oxy]-, (1R,3R,4S,5R)-
ATH06p03160 LinkIcon - -
-
ATH10p03645 LinkIcon - -
-
ATH11p03173 LinkIcon - -
-
ATH11p03177 LinkIcon - -
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ATH12p03135 LinkIcon - -
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ATH12p03704 LinkIcon - -
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ATH57p03279 LinkIcon - -
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ATH57p03872 LinkIcon - -
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ATH58p03288 LinkIcon - -
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ATH58p03595 LinkIcon - -
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ATH58p03979 LinkIcon - -
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ATH58p04413 LinkIcon - -
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ATH61p04876 LinkIcon - -
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ATH61p05448 LinkIcon - -
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ATH61p05638 LinkIcon - -
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ATH62p03264 LinkIcon - -
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ATH62p03828 LinkIcon - -
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2. Gene information

No. ID Short description Curator summary Computational description
1
at1g76420
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein Identified in an enhancer trap line; member of the NAC family of proteins. Expressed at the boundary between the shoot meristem and lateral organs and the polar nuclei in the embryo sac. CUP SHAPED COTYLEDON3 (CUC3); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 38 (TAIR:AT2G24430.2); Has 3010 Blast hits to 3003 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3005; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
2
at3g23890
topoisomerase II Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues. topoisomerase II (TOPII); CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IIA, subunit A/C-terminal (InterPro:IPR002205), DNA topoisomerase, type IIA, conserved site (InterPro:IPR018522), DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta (InterPro:IPR013758), DNA topoisomerase, type IIA, subunit A, alpha-helical (InterPro:IPR013757), DNA topoisomerase, type IIA, subunit B, domain 2 (InterPro:IPR013506), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta (InterPro:IPR013759), DNA topoisomerase, type IIA, subunit B/N-terminal (InterPro:IPR001241), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA topoisomerase II, eukaryotic-type (InterPro:IPR001154), DNA topoisomerase, type IIA, central (InterPro:IPR013760); BEST Arabidopsis thaliana protein match is: DNA GYRASE B2 (TAIR:AT5G04130.1); Has 46226 Blast hits to 43639 proteins in 5982 species: Archae - 169; Bacteria - 28615; Metazoa - 2871; Fungi - 1392; Plants - 616; Viruses - 201; Other Eukaryotes - 12362 (source: NCBI BLink).
3
at3g50070
CYCLIN D3;3 Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development. CYCLIN D3;3 (CYCD3;3); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle, regulation of cell proliferation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D3;2 (TAIR:AT5G67260.1); Has 3177 Blast hits to 3175 proteins in 306 species: Archae - 0; Bacteria - 0; Metazoa - 1493; Fungi - 379; Plants - 953; Viruses - 3; Other Eukaryotes - 349 (source: NCBI BLink).
4
at3g53310
AP2/B3-like transcriptional factor family protein - AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G06160.2); Has 6284 Blast hits to 2802 proteins in 274 species: Archae - 3; Bacteria - 1667; Metazoa - 1559; Fungi - 645; Plants - 847; Viruses - 128; Other Eukaryotes - 1435 (source: NCBI BLink).
5
at4g31805
WRKY family transcription factor - WRKY family transcription factor; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G10890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
6
at5g45700
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: phosphatase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G29770.1); Has 2652 Blast hits to 2641 proteins in 258 species: Archae - 0; Bacteria - 12; Metazoa - 831; Fungi - 550; Plants - 465; Viruses - 15; Other Eukaryotes - 779 (source: NCBI BLink).
7
at5g57720
AP2/B3-like transcriptional factor family protein - AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G06160.2); Has 295 Blast hits to 283 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 6; Plants - 282; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
8
at5g66940
Dof-type zinc finger DNA-binding family protein - Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: OBF binding protein 1 (TAIR:AT3G50410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

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Integrated Genome Informatics Research Unit