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• Gene information ▼

1. Metabolite information

No.	AtMetExp ID	Polality	MS2T ID	ReSpect
				Accession	Score	Description
1	adp014789	Positive	ATH12p06623	PT112580	0.957	delta-Tocotrienol; MS2; Q-Tof; [M+H]+    delta-Tocotrienol   8-Methyltocotrienol   (R)-delta-Tocotrienol   (2R)-2,8-dimethyl-2-[(3E,7E)-4,8,12-trimethyltrideca-3,7,11-trienyl]chroman-6-ol
			ATH63p06481	PT111790	0.952	Sinapoyl malate; MS2; Q-Tof; [M+H]+    Sinapoyl malate   Sinapoyl-(S)-malate   2-O-sinapoylmalate   (2S)-2-[(E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxybutanedioic acid
			ATH13p07451	PS079101	0.916	trans-3,5-Dimethoxy-4-hydroxycinnamaldehyde; MS2; QqQ; positive; CE 10 V    trans-3,5-Dimethoxy-4-hydroxycinnamaldehyde   Sinapinaldehyde   Sinapaldehyde   Sinapoyl aldehyde   Sinapyl aldehyde   trans-3,5-Dimethoxy-alpha-hydroxy-cinnamaldehyde   3-4-Hydroxy-3,5-dimethoxyphenylprop-2-enal   4-Hydroxy-3,5-dimethoxycinnamaldehyde
			ATH06p07126	PS079101	0.910	trans-3,5-Dimethoxy-4-hydroxycinnamaldehyde; MS2; QqQ; positive; CE 10 V    trans-3,5-Dimethoxy-4-hydroxycinnamaldehyde   Sinapinaldehyde   Sinapaldehyde   Sinapoyl aldehyde   Sinapyl aldehyde   trans-3,5-Dimethoxy-alpha-hydroxy-cinnamaldehyde   3-4-Hydroxy-3,5-dimethoxyphenylprop-2-enal   4-Hydroxy-3,5-dimethoxycinnamaldehyde
			ATH10p06039	PS079101	0.900	trans-3,5-Dimethoxy-4-hydroxycinnamaldehyde; MS2; QqQ; positive; CE 10 V    trans-3,5-Dimethoxy-4-hydroxycinnamaldehyde   Sinapinaldehyde   Sinapaldehyde   Sinapoyl aldehyde   Sinapyl aldehyde   trans-3,5-Dimethoxy-alpha-hydroxy-cinnamaldehyde   3-4-Hydroxy-3,5-dimethoxyphenylprop-2-enal   4-Hydroxy-3,5-dimethoxycinnamaldehyde
			ATH06p06418	-	-	-
			ATH06p06422	-	-	-
			ATH06p07124	-	-	-
			ATH07p06107	-	-	-
			ATH07p06453	-	-	-
			ATH07p06457	-	-	-
			ATH08p06932	-	-	-
			ATH08p07479	-	-	-
			ATH09p06299	-	-	-
			ATH09p06695	-	-	-
			ATH09p06698	-	-	-
			ATH10p06043	-	-	-
			ATH10p06420	-	-	-
			ATH10p06423	-	-	-
			ATH11p06449	-	-	-
			ATH11p06811	-	-	-
			ATH11p06936	-	-	-
			ATH11p07199	-	-	-
			ATH13p07454	-	-	-
			ATH13p08201	-	-	-
			ATH13p08204	-	-	-
			ATH14p07052	-	-	-
			ATH14p07251	-	-	-
			ATH56p06412	-	-	-
			ATH56p06417	-	-	-
			ATH56p06802	-	-	-
			ATH56p06804	-	-	-
			ATH56p07044	-	-	-
			ATH57p05929	-	-	-
			ATH57p05932	-	-	-
			ATH57p06317	-	-	-
			ATH57p06321	-	-	-
			ATH58p07374	-	-	-
			ATH58p07661	-	-	-
			ATH58p08033	-	-	-
			ATH58p08532	-	-	-
			ATH59p06153	-	-	-
			ATH59p06158	-	-	-
			ATH59p06508	-	-	-
			ATH59p06512	-	-	-
			ATH61p07974	-	-	-
			ATH61p08167	-	-	-
			ATH61p08381	-	-	-
			ATH61p08649	-	-	-
			ATH62p05915	-	-	-
			ATH62p05917	-	-	-
			ATH63p06486	-	-	-
			ATH63p06911	-	-	-
			ATH63p07282	-	-	-
			ATH63p08053	-	-	-
			ATH63p08056	-	-	-
			ATH63p08828	-	-	-
			ATH63p08831	-	-	-

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2. Gene information

No.	ID	Short description	Curator summary	Computational description
1	at1g32960 eFP TAIR	Subtilase family protein	-	SBT3.3; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT1G32950.1); Has 7025 Blast hits to 6424 proteins in 1056 species: Archae - 218; Bacteria - 3952; Metazoa - 121; Fungi - 168; Plants - 1966; Viruses - 0; Other Eukaryotes - 600 (source: NCBI BLink).
2	at1g48000 eFP TAIR	myb domain protein 112	Encodes a putative transcription factor (MYB112).	myb domain protein 112 (MYB112); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 78 (TAIR:AT5G49620.1); Has 8716 Blast hits to 8036 proteins in 469 species: Archae - 0; Bacteria - 0; Metazoa - 760; Fungi - 469; Plants - 5758; Viruses - 6; Other Eukaryotes - 1723 (source: NCBI BLink).
3	at1g67980 eFP TAIR	caffeoyl-CoA 3-O-methyltransferase	Encodes S-adenosyl-L-methionine: transcaffeoyl Coenzyme A 3-O-methyltransferase.	caffeoyl-CoA 3-O-methyltransferase (CCOAMT); CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G67990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
4	at1g69490 eFP TAIR	NAC-like, activated by AP3/PI	Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence.	NAC-like, activated by AP3/PI (NAP); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 25 (TAIR:AT1G61110.1); Has 3046 Blast hits to 3040 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3046; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
5	at3g05630 eFP TAIR	phospholipase D P2	Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning.	phospholipase D P2 (PLDP2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: in 7 processes; LOCATED IN: vacuole; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Phospholipase D, eukaryota (InterPro:IPR016555), Phospholipase D (InterPro:IPR015679), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: phospholipase D P1 (TAIR:AT3G16785.1); Has 2813 Blast hits to 1615 proteins in 467 species: Archae - 4; Bacteria - 808; Metazoa - 511; Fungi - 591; Plants - 736; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
6	at3g08870 eFP TAIR	Concanavalin A-like lectin protein kinase family protein	-	Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin receptor kinase a4.1 (TAIR:AT5G01550.1); Has 126249 Blast hits to 124574 proteins in 5056 species: Archae - 117; Bacteria - 14623; Metazoa - 46287; Fungi - 11015; Plants - 35222; Viruses - 451; Other Eukaryotes - 18534 (source: NCBI BLink).
7	at3g17790 eFP TAIR	purple acid phosphatase 17	-	purple acid phosphatase 17 (PAP17); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 3 (TAIR:AT1G14700.1); Has 1229 Blast hits to 1218 proteins in 312 species: Archae - 4; Bacteria - 345; Metazoa - 336; Fungi - 8; Plants - 191; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).
8	at3g21780 eFP TAIR	UDP-glucosyl transferase 71B6	Encodes a protein with UDP-glucosyl transferase activity that was shown to preferentially glucosylates abscisic acid (ABA), and not its catabolites. Moreover, UGT71B6 was shown to have a strict preference for the naturally-occurring ABA enantiomer, (+)-ABA, and not its 'unnatural' relative, (-)-ABA. This is in contrast to the other identified UGT genes catalyzing the glucosylation of ABA which were shown to accept both stereoisomers as substrates.	UDP-glucosyl transferase 71B6 (UGT71B6); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, abscisic acid glucosyltransferase activity; INVOLVED IN: response to salt stress, response to abscisic acid stimulus, response to osmotic stress, abscisic acid catabolic process; LOCATED IN: membrane; EXPRESSED IN: stem, rosette leaf, cultured cell, stamen, leaf; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT3G21790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
9	at3g28540 eFP TAIR	P-loop containing nucleoside triphosphate hydrolases superfamily protein	-	P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28510.1); Has 19094 Blast hits to 18394 proteins in 2794 species: Archae - 1114; Bacteria - 6721; Metazoa - 2744; Fungi - 2271; Plants - 2238; Viruses - 33; Other Eukaryotes - 3973 (source: NCBI BLink).
10	at3g57680 eFP TAIR	Peptidase S41 family protein	-	Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: chloroplast thylakoid lumen, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT4G17740.2); Has 8999 Blast hits to 8993 proteins in 1973 species: Archae - 1; Bacteria - 5400; Metazoa - 54; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 3392 (source: NCBI BLink).
11	at3g61930 eFP TAIR	-	-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
12	at3g63380 eFP TAIR	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein	-	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: calcium-transporting ATPase activity, calmodulin binding; INVOLVED IN: calcium ion transport, cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT3G22910.1); Has 46574 Blast hits to 34715 proteins in 3214 species: Archae - 909; Bacteria - 32032; Metazoa - 4086; Fungi - 2666; Plants - 2162; Viruses - 3; Other Eukaryotes - 4716 (source: NCBI BLink).
13	at4g33040 eFP TAIR	Thioredoxin superfamily protein	-	Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT5G11930.1); Has 1149 Blast hits to 1147 proteins in 175 species: Archae - 0; Bacteria - 20; Metazoa - 257; Fungi - 124; Plants - 712; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
14	at5g39610 eFP TAIR	NAC domain containing protein 6	Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510.	NAC domain containing protein 6 (NAC6); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 3 (TAIR:AT3G29035.1); Has 3041 Blast hits to 3034 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3041; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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RIKEN Center for Sustainable Resource Science
Integrated Genome Informatics Research Unit