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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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Choosing cell X:" 2 " Y:" 4 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn037532 LinkIcon Negative ATH63n08407 LinkIcon PT210990 LinkIcon 0.953
D-(+)-Raffinose pentahydrate ; MS2; Q-Tof; [M-H]-
   D-(+)-Raffinose pentahydrate
  Gal(alpha1-6)Glc(alpha1-2beta)Fruf
  6G-alpha-D-galactosylsucrose
  Raffinose
  Gossypose
  Melitose
  Melitriose
  (2R,3R,4S,5S,6R)-2-[(2S,3S,4S,5R)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-6-[[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxane-3,4,5-triol
ATH63n08410 LinkIcon PT210990 LinkIcon 0.953
D-(+)-Raffinose pentahydrate ; MS2; Q-Tof; [M-H]-
   D-(+)-Raffinose pentahydrate
  Gal(alpha1-6)Glc(alpha1-2beta)Fruf
  6G-alpha-D-galactosylsucrose
  Raffinose
  Gossypose
  Melitose
  Melitriose
  (2R,3R,4S,5S,6R)-2-[(2S,3S,4S,5R)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-6-[[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxane-3,4,5-triol
ATH63n09170 LinkIcon PT210990 LinkIcon 0.953
D-(+)-Raffinose pentahydrate ; MS2; Q-Tof; [M-H]-
   D-(+)-Raffinose pentahydrate
  Gal(alpha1-6)Glc(alpha1-2beta)Fruf
  6G-alpha-D-galactosylsucrose
  Raffinose
  Gossypose
  Melitose
  Melitriose
  (2R,3R,4S,5S,6R)-2-[(2S,3S,4S,5R)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-6-[[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxane-3,4,5-triol
ATH13n07059 LinkIcon PT210990 LinkIcon 0.951
D-(+)-Raffinose pentahydrate ; MS2; Q-Tof; [M-H]-
   D-(+)-Raffinose pentahydrate
  Gal(alpha1-6)Glc(alpha1-2beta)Fruf
  6G-alpha-D-galactosylsucrose
  Raffinose
  Gossypose
  Melitose
  Melitriose
  (2R,3R,4S,5S,6R)-2-[(2S,3S,4S,5R)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-6-[[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxane-3,4,5-triol
ATH64n08586 LinkIcon PT210990 LinkIcon 0.945
D-(+)-Raffinose pentahydrate ; MS2; Q-Tof; [M-H]-
   D-(+)-Raffinose pentahydrate
  Gal(alpha1-6)Glc(alpha1-2beta)Fruf
  6G-alpha-D-galactosylsucrose
  Raffinose
  Gossypose
  Melitose
  Melitriose
  (2R,3R,4S,5S,6R)-2-[(2S,3S,4S,5R)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-6-[[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxane-3,4,5-triol
ATH13n07062 LinkIcon PT210990 LinkIcon 0.943
D-(+)-Raffinose pentahydrate ; MS2; Q-Tof; [M-H]-
   D-(+)-Raffinose pentahydrate
  Gal(alpha1-6)Glc(alpha1-2beta)Fruf
  6G-alpha-D-galactosylsucrose
  Raffinose
  Gossypose
  Melitose
  Melitriose
  (2R,3R,4S,5S,6R)-2-[(2S,3S,4S,5R)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-6-[[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxane-3,4,5-triol
ATH63n09173 LinkIcon PT210990 LinkIcon 0.940
D-(+)-Raffinose pentahydrate ; MS2; Q-Tof; [M-H]-
   D-(+)-Raffinose pentahydrate
  Gal(alpha1-6)Glc(alpha1-2beta)Fruf
  6G-alpha-D-galactosylsucrose
  Raffinose
  Gossypose
  Melitose
  Melitriose
  (2R,3R,4S,5S,6R)-2-[(2S,3S,4S,5R)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-6-[[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxane-3,4,5-triol
ATH13n07745 LinkIcon PT210990 LinkIcon 0.939
D-(+)-Raffinose pentahydrate ; MS2; Q-Tof; [M-H]-
   D-(+)-Raffinose pentahydrate
  Gal(alpha1-6)Glc(alpha1-2beta)Fruf
  6G-alpha-D-galactosylsucrose
  Raffinose
  Gossypose
  Melitose
  Melitriose
  (2R,3R,4S,5S,6R)-2-[(2S,3S,4S,5R)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-6-[[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxane-3,4,5-triol
ATH10n05853 LinkIcon PM002601 LinkIcon 0.938
3-Demethoxy-9a-hydroxylpiperitol-O-diglucoside; MS2; QIT; M-H; 35%
   3-Demethoxy-9a-hydroxylpiperitol-O-diglucoside
ATH12n04461 LinkIcon PM002601 LinkIcon 0.922
3-Demethoxy-9a-hydroxylpiperitol-O-diglucoside; MS2; QIT; M-H; 35%
   3-Demethoxy-9a-hydroxylpiperitol-O-diglucoside
ATH09n08625 LinkIcon PT210990 LinkIcon 0.921
D-(+)-Raffinose pentahydrate ; MS2; Q-Tof; [M-H]-
   D-(+)-Raffinose pentahydrate
  Gal(alpha1-6)Glc(alpha1-2beta)Fruf
  6G-alpha-D-galactosylsucrose
  Raffinose
  Gossypose
  Melitose
  Melitriose
  (2R,3R,4S,5S,6R)-2-[(2S,3S,4S,5R)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-6-[[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxane-3,4,5-triol
ATH12n03922 LinkIcon PT210990 LinkIcon 0.919
D-(+)-Raffinose pentahydrate ; MS2; Q-Tof; [M-H]-
   D-(+)-Raffinose pentahydrate
  Gal(alpha1-6)Glc(alpha1-2beta)Fruf
  6G-alpha-D-galactosylsucrose
  Raffinose
  Gossypose
  Melitose
  Melitriose
  (2R,3R,4S,5S,6R)-2-[(2S,3S,4S,5R)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-6-[[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxane-3,4,5-triol
ATH13n07748 LinkIcon PM002601 LinkIcon 0.917
3-Demethoxy-9a-hydroxylpiperitol-O-diglucoside; MS2; QIT; M-H; 35%
   3-Demethoxy-9a-hydroxylpiperitol-O-diglucoside
ATH60n09595 LinkIcon PS126007 LinkIcon 0.916
1-Kestose; MS2; QqQ; negative; CE 10 V
   1-Kestose
  1F-beta-D-Fructosylsucrose
  O-beta-D-Fructofuranosyl-(2-1)-beta-D-fructofuranosyl-alpha-D-glucopyranoside
ATH62n08462 LinkIcon PT210990 LinkIcon 0.912
D-(+)-Raffinose pentahydrate ; MS2; Q-Tof; [M-H]-
   D-(+)-Raffinose pentahydrate
  Gal(alpha1-6)Glc(alpha1-2beta)Fruf
  6G-alpha-D-galactosylsucrose
  Raffinose
  Gossypose
  Melitose
  Melitriose
  (2R,3R,4S,5S,6R)-2-[(2S,3S,4S,5R)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-6-[[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxane-3,4,5-triol
ATH14n07501 LinkIcon PM002601 LinkIcon 0.908
3-Demethoxy-9a-hydroxylpiperitol-O-diglucoside; MS2; QIT; M-H; 35%
   3-Demethoxy-9a-hydroxylpiperitol-O-diglucoside
ATH14n06859 LinkIcon PT210990 LinkIcon 0.905
D-(+)-Raffinose pentahydrate ; MS2; Q-Tof; [M-H]-
   D-(+)-Raffinose pentahydrate
  Gal(alpha1-6)Glc(alpha1-2beta)Fruf
  6G-alpha-D-galactosylsucrose
  Raffinose
  Gossypose
  Melitose
  Melitriose
  (2R,3R,4S,5S,6R)-2-[(2S,3S,4S,5R)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-6-[[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxane-3,4,5-triol
ATH06n05118 LinkIcon - -
-
ATH07n05202 LinkIcon - -
-
ATH07n05908 LinkIcon - -
-
ATH09n08220 LinkIcon - -
-
ATH10n05201 LinkIcon - -
-
ATH10n05851 LinkIcon - -
-
ATH11n05031 LinkIcon - -
-
ATH12n03923 LinkIcon - -
-
ATH12n04463 LinkIcon - -
-
ATH14n07100 LinkIcon - -
-
ATH14n07498 LinkIcon - -
-
ATH56n10342 LinkIcon - -
-
ATH57n09042 LinkIcon - -
-
ATH57n09767 LinkIcon - -
-
ATH59n08982 LinkIcon - -
-
ATH59n09721 LinkIcon - -
-
ATH59n09973 LinkIcon - -
-
ATH60n08886 LinkIcon - -
-
ATH60n09140 LinkIcon - -
-
ATH60n09591 LinkIcon - -
-
ATH61n08617 LinkIcon - -
-
ATH61n08829 LinkIcon - -
-
ATH62n08460 LinkIcon - -
-
ATH62n09175 LinkIcon - -
-
ATH62n09177 LinkIcon - -
-
ATH64n09315 LinkIcon - -
-
2 adn040367 LinkIcon Negative ATH09n08624 LinkIcon - -
-
ATH09n09237 LinkIcon - -
-
ATH13n07990 LinkIcon - -
-
ATH13n08375 LinkIcon - -
-
ATH13n08617 LinkIcon - -
-
ATH57n09764 LinkIcon - -
-
ATH59n09719 LinkIcon - -
-
ATH60n09590 LinkIcon - -
-
ATH60n10292 LinkIcon - -
-
ATH63n09422 LinkIcon - -
-
ATH63n10160 LinkIcon - -
-
ATH64n09571 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g29770
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G29780.1); Has 2585 Blast hits to 2574 proteins in 264 species: Archae - 0; Bacteria - 16; Metazoa - 830; Fungi - 532; Plants - 436; Viruses - 23; Other Eukaryotes - 748 (source: NCBI BLink).
2
at1g80570
RNI-like superfamily protein - RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G15475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
3
at2g07687
Cytochrome c oxidase, subunit III - Cytochrome c oxidase, subunit III; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: mitochondrial electron transport, cytochrome c to oxygen; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit III (InterPro:IPR000298); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase subunit 3 (TAIR:ATMG00730.1); Has 29038 Blast hits to 29025 proteins in 5946 species: Archae - 74; Bacteria - 4466; Metazoa - 19232; Fungi - 401; Plants - 673; Viruses - 0; Other Eukaryotes - 4192 (source: NCBI BLink).
4
at2g44990
carotenoid cleavage dioxygenase 7 More Axillary Branching; carotenoid cleavage dioxygenases. carotenoid cleavage dioxygenase 7 (CCD7); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 6 (TAIR:AT3G24220.1); Has 211 Blast hits to 206 proteins in 62 species: Archae - 2; Bacteria - 69; Metazoa - 8; Fungi - 31; Plants - 96; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
5
at2g45290
Transketolase - Transketolase; FUNCTIONS IN: catalytic activity, transketolase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, bacterial-like (InterPro:IPR005478), Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475), Transketolase binding site (InterPro:IPR020826); BEST Arabidopsis thaliana protein match is: Transketolase (TAIR:AT3G60750.1); Has 19460 Blast hits to 19400 proteins in 2776 species: Archae - 200; Bacteria - 11520; Metazoa - 310; Fungi - 312; Plants - 211; Viruses - 0; Other Eukaryotes - 6907 (source: NCBI BLink).
6
at3g03310
lecithin:cholesterol acyltransferase 3 - lecithin:cholesterol acyltransferase 3 (LCAT3); FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G19860.1); Has 560 Blast hits to 555 proteins in 155 species: Archae - 2; Bacteria - 82; Metazoa - 189; Fungi - 22; Plants - 147; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
7
at3g20910
nuclear factor Y, subunit A9 - "nuclear factor Y, subunit A9" (NF-YA9); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A1 (TAIR:AT5G12840.4); Has 696 Blast hits to 696 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 142; Plants - 380; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
8
at3g23340
casein kinase I-like 10 - casein kinase I-like 10 (ckl10); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I (TAIR:AT4G14340.1); Has 56550 Blast hits to 56234 proteins in 2232 species: Archae - 39; Bacteria - 9117; Metazoa - 21673; Fungi - 6267; Plants - 8804; Viruses - 331; Other Eukaryotes - 10319 (source: NCBI BLink).
9
at4g38380
MATE efflux family protein - MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G38330.1); Has 13476 Blast hits to 13444 proteins in 2154 species: Archae - 331; Bacteria - 10835; Metazoa - 81; Fungi - 150; Plants - 389; Viruses - 0; Other Eukaryotes - 1690 (source: NCBI BLink).
10
at5g38780
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G38100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
11
at5g62520
similar to RCD one 5 Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response. similar to RCD one 5 (SRO5); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: similar to RCD one 4 (TAIR:AT3G47720.1); Has 162 Blast hits to 153 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
12
at5g65750
2-oxoglutarate dehydrogenase, E1 component - 2-oxoglutarate dehydrogenase, E1 component; FUNCTIONS IN: oxoglutarate dehydrogenase (succinyl-transferring) activity, cobalt ion binding, zinc ion binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxoglutarate dehydrogenase, E1 component (InterPro:IPR011603), Dehydrogenase, E1 component (InterPro:IPR001017), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate dehydrogenase, E1 component (TAIR:AT3G55410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
13
atMg00730
cytochrome c oxidase subunit 3 Encodes cytochrome c oxidase subunit 3. cytochrome c oxidase subunit 3 (COX3); CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit III (InterPro:IPR000298); BEST Arabidopsis thaliana protein match is: Cytochrome c oxidase, subunit III (TAIR:AT2G07687.1).

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Integrated Genome Informatics Research Unit