Home Gene search Metabolite search PRIMe
 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
 Highlight filters
Keyword
Polarity
Query M/Z
m/z tolerance ±
AtMetExpress peak IDs
MS2T IDs
ReSpect accessions

Choosing cell X:" 4 " Y:" 23 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn034723 LinkIcon Negative ATH06n04493 LinkIcon - -
-
ATH07n04673 LinkIcon - -
-
ATH07n05767 LinkIcon - -
-
ATH08n07758 LinkIcon - -
-
ATH08n07999 LinkIcon - -
-
ATH09n07637 LinkIcon - -
-
ATH09n07640 LinkIcon - -
-
ATH09n08495 LinkIcon - -
-
ATH09n08499 LinkIcon - -
-
ATH12n03512 LinkIcon - -
-
ATH12n04204 LinkIcon - -
-
ATH14n06742 LinkIcon - -
-
ATH56n09653 LinkIcon - -
-
ATH57n08374 LinkIcon - -
-
ATH57n09601 LinkIcon - -
-
ATH59n08565 LinkIcon - -
-
ATH60n08467 LinkIcon - -
-
ATH61n07487 LinkIcon - -
-
ATH61n08213 LinkIcon - -
-
ATH62n08055 LinkIcon - -
-
2 adp020250 LinkIcon Positive ATH63p09918 LinkIcon PT104690 LinkIcon 0.966
3-cyanopyridine; MS2; Q-Tof; [M+H]+
   3-cyanopyridine
  3-Pyridinecarbonitrile
  Nicotinic acid nitrile
  Nicotinonitrile
  Pyridine-3-carbonitrile
  beta-Pyridyl Cyanide
  3-Azabenzonitrile
  3-Pyridinecarbonitrile
  pyridine-3-carbonitrile
ATH06p08761 LinkIcon - -
-
ATH12p08253 LinkIcon - -
-
ATH56p09533 LinkIcon - -
-
ATH58p10473 LinkIcon - -
-
ATH58p10876 LinkIcon - -
-
ATH61p10124 LinkIcon - -
-
ATH61p11359 LinkIcon - -
-
ATH63p09165 LinkIcon - -
-
ATH63p09916 LinkIcon - -
-
3 adp026827 LinkIcon Positive ATH56p11829 LinkIcon PM018121 LinkIcon 0.931
4-Methylsulfinyl-n-butyl glucosinolate; MS2; Q-TOF; M+H; 15->55V
   4-Methylsulfinyl-n-butyl glucosinolate
  glucoraphanin
ATH08p11197 LinkIcon - -
-
ATH09p10082 LinkIcon - -
-
ATH11p09868 LinkIcon - -
-
ATH11p10271 LinkIcon - -
-
ATH58p13434 LinkIcon - -
-
ATH58p13691 LinkIcon - -
-
ATH61p13388 LinkIcon - -
-
ATH62p10959 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g17770
SU(VAR)3-9 homolog 7 Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. SU(VAR)3-9 homolog 7 (SUVH7); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Post-SET domain (InterPro:IPR003616), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SET domain group 21 (TAIR:AT2G24740.1); Has 4570 Blast hits to 4388 proteins in 399 species: Archae - 0; Bacteria - 282; Metazoa - 2143; Fungi - 453; Plants - 1096; Viruses - 0; Other Eukaryotes - 596 (source: NCBI BLink).
2
at1g53100
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT3G15350.2); Has 949 Blast hits to 948 proteins in 119 species: Archae - 0; Bacteria - 46; Metazoa - 553; Fungi - 0; Plants - 316; Viruses - 14; Other Eukaryotes - 20 (source: NCBI BLink).
3
at1g54160
nuclear factor Y, subunit A5 Encodes a member of the CCAAT-binding transcription factor (CBF-B/NF-YA) family. Expression is upregulated in response to ABA and drought. This regulation appears to be mediated by MIR169A which is downregulated in response to drought. NFYA5 is a target of MIR169A. Loss of function mutations are hypersensitive to drought. "nuclear factor Y, subunit A5" (NF-YA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: response to water deprivation, negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A6 (TAIR:AT3G14020.1); Has 683 Blast hits to 683 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 133; Plants - 381; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
4
at1g65240
Eukaryotic aspartyl protease family protein - Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G36260.1); Has 3473 Blast hits to 3458 proteins in 317 species: Archae - 0; Bacteria - 0; Metazoa - 737; Fungi - 714; Plants - 1798; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).
5
at2g24740
SET domain group 21 Encodes a SU(VAR)3-9 homolog, a SET domain protein (Homology Subgroup V; Orthology Group 1). Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. This protein is a putative histone methyltransferase (predicted to methylate H3K9/20) related to the the Drosophila Su(var)3-9 and mammalian G9a proteins. SET domain group 21 (SDG21); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: regulation of gene expression, epigenetic; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), AT hook, DNA-binding motif (InterPro:IPR017956), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 7 (TAIR:AT1G17770.1); Has 4288 Blast hits to 4094 proteins in 395 species: Archae - 0; Bacteria - 274; Metazoa - 2162; Fungi - 458; Plants - 1048; Viruses - 4; Other Eukaryotes - 342 (source: NCBI BLink).
6
at3g26290
cytochrome P450, family 71, subfamily B, polypeptide 26 putative cytochrome P450 "cytochrome P450, family 71, subfamily B, polypeptide 26" (CYP71B26); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily B, polypeptide 34 (TAIR:AT3G26300.1); Has 33376 Blast hits to 33121 proteins in 1698 species: Archae - 51; Bacteria - 3546; Metazoa - 11995; Fungi - 7038; Plants - 9514; Viruses - 3; Other Eukaryotes - 1229 (source: NCBI BLink).
7
at3g45130
lanosterol synthase 1 - lanosterol synthase 1 (LAS1); CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: cycloartenol synthase 1 (TAIR:AT2G07050.1); Has 2160 Blast hits to 1916 proteins in 566 species: Archae - 4; Bacteria - 1015; Metazoa - 82; Fungi - 243; Plants - 610; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
8
at4g01420
calcineurin B-like protein 5 Encodes calcineurin B-like protein 5 (CBL5). Overexpression confers tolerance to drought and salt stress. calcineurin B-like protein 5 (CBL5); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to salt stress, response to water deprivation, N-terminal protein myristoylation, calcium-mediated signaling, response to osmotic stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, flower, leaf; CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G24270.2); Has 5545 Blast hits to 5527 proteins in 657 species: Archae - 0; Bacteria - 7; Metazoa - 2787; Fungi - 925; Plants - 1302; Viruses - 0; Other Eukaryotes - 524 (source: NCBI BLink).
9
at4g17695
Homeodomain-like superfamily protein - KANADI 3 (KAN3); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G32240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
10
at5g02490
Heat shock protein 70 (Hsp 70) family protein - Heat shock protein 70 (Hsp 70) family protein; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, response to cadmium ion, response to heat, response to bacterium; LOCATED IN: cytosol, cell wall, plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate protein 70-1 (TAIR:AT5G02500.1); Has 34231 Blast hits to 33880 proteins in 4856 species: Archae - 163; Bacteria - 16495; Metazoa - 3845; Fungi - 1761; Plants - 1263; Viruses - 309; Other Eukaryotes - 10395 (source: NCBI BLink).

Creative Commons License
RIKEN Center for Sustainable Resource Science
Integrated Genome Informatics Research Unit