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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
 Highlight filters
Keyword
Polarity
Query M/Z
m/z tolerance ±
AtMetExpress peak IDs
MS2T IDs
ReSpect accessions

Choosing cell X:" 4 " Y:" 3 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn038043 LinkIcon Negative ATH56n09123 LinkIcon PM018030 LinkIcon 0.913
Putative glucosinolate; MS2; Q-TOF; M-H; 15->55V
   Putative glucosinolate
ATH56n10391 LinkIcon PM018030 LinkIcon 0.912
Putative glucosinolate; MS2; Q-TOF; M-H; 15->55V
   Putative glucosinolate
ATH62n08758 LinkIcon PM018030 LinkIcon 0.912
Putative glucosinolate; MS2; Q-TOF; M-H; 15->55V
   Putative glucosinolate
ATH63n09476 LinkIcon PM018030 LinkIcon 0.911
Putative glucosinolate; MS2; Q-TOF; M-H; 15->55V
   Putative glucosinolate
ATH63n08458 LinkIcon PM018030 LinkIcon 0.901
Putative glucosinolate; MS2; Q-TOF; M-H; 15->55V
   Putative glucosinolate
ATH06n05688 LinkIcon - -
-
ATH07n05744 LinkIcon - -
-
ATH07n05964 LinkIcon - -
-
ATH08n08220 LinkIcon - -
-
ATH08n08848 LinkIcon - -
-
ATH08n09025 LinkIcon - -
-
ATH09n08473 LinkIcon - -
-
ATH09n08676 LinkIcon - -
-
ATH10n05701 LinkIcon - -
-
ATH10n05906 LinkIcon - -
-
ATH11n05072 LinkIcon - -
-
ATH12n04344 LinkIcon - -
-
ATH12n04347 LinkIcon - -
-
ATH12n04683 LinkIcon - -
-
ATH13n07109 LinkIcon - -
-
ATH13n07794 LinkIcon - -
-
ATH14n07362 LinkIcon - -
-
ATH14n07365 LinkIcon - -
-
ATH14n07777 LinkIcon - -
-
ATH56n10137 LinkIcon - -
-
ATH57n09344 LinkIcon - -
-
ATH57n09823 LinkIcon - -
-
ATH57n10287 LinkIcon - -
-
ATH58n10524 LinkIcon - -
-
ATH59n09284 LinkIcon - -
-
ATH59n09776 LinkIcon - -
-
ATH59n10252 LinkIcon - -
-
ATH60n09647 LinkIcon - -
-
ATH60n09886 LinkIcon - -
-
ATH61n08185 LinkIcon - -
-
ATH61n09121 LinkIcon - -
-
ATH61n09126 LinkIcon - -
-
ATH62n08762 LinkIcon - -
-
ATH62n09228 LinkIcon - -
-
ATH62n09652 LinkIcon - -
-
ATH64n08895 LinkIcon - -
-
ATH64n09621 LinkIcon - -
-
2 adp000492 LinkIcon Positive - - -
-
3 adp017283 LinkIcon Positive ATH13p09400 LinkIcon PM018110 LinkIcon 1.000
Unknown PCE#1; MS2; Q-TOF; M+H; 15->55V
   Unknown PCE#1
ATH63p09558 LinkIcon PM018110 LinkIcon 0.965
Unknown PCE#1; MS2; Q-TOF; M+H; 15->55V
   Unknown PCE#1
ATH63p10820 LinkIcon PM018110 LinkIcon 0.965
Unknown PCE#1; MS2; Q-TOF; M+H; 15->55V
   Unknown PCE#1
ATH08p08158 LinkIcon PT112530 LinkIcon 0.926
Calciferol; MS2; Q-Tof; [M+H]+
   Calciferol
  Vitamin D2
  Ergocalciferol
  Viosterin
  Osteil
  Viosterol
  Ercalciol
  Irradiated ergosterol
  Condacaps
  Condocaps
  Condol
  Crtron
  Crystallina
  Daral
  (5Z,7E,22E)-(3S)-9,10-Secoergosta-5,7,10(19),22-tetraen-3-ol
  Davitin
  Deltalin
  Deratol
  Diactol
  Drisdol
  Ergorone
  Ertron
  Fortodyl
  Geltabs
  Hyperkil
  Irradiated ergosta-5,7,22-trien-3-beta-ol
  Metadee
ATH07p07548 LinkIcon - -
-
ATH62p06624 LinkIcon - -
-
4 adp019673 LinkIcon Positive ATH13p09178 LinkIcon PS080101 LinkIcon 0.975
L-beta-Homophenylalanine hydrochloride; MS2; QqQ; positive; CE 10 V
   L-beta-Homophenylalanine hydrochloride
  (S)-3-Amino-4-phenylbutyric acid hydrochloride
ATH13p10050 LinkIcon PS080101 LinkIcon 0.965
L-beta-Homophenylalanine hydrochloride; MS2; QqQ; positive; CE 10 V
   L-beta-Homophenylalanine hydrochloride
  (S)-3-Amino-4-phenylbutyric acid hydrochloride
ATH06p08135 LinkIcon - -
-
ATH08p08575 LinkIcon - -
-
ATH11p07869 LinkIcon - -
-
ATH12p08129 LinkIcon - -
-
ATH56p08369 LinkIcon - -
-
ATH58p10657 LinkIcon - -
-
ATH59p07583 LinkIcon - -
-
ATH62p07174 LinkIcon - -
-
ATH62p07580 LinkIcon - -
-
ATH63p10344 LinkIcon - -
-
ATH63p10595 LinkIcon - -
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ATH63p11099 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g66650
Protein with RING/U-box and TRAF-like domains - Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT5G37930.1); Has 1538 Blast hits to 1533 proteins in 685 species: Archae - 0; Bacteria - 0; Metazoa - 1019; Fungi - 2; Plants - 466; Viruses - 2; Other Eukaryotes - 49 (source: NCBI BLink).
2
at1g77570
Winged helix-turn-helix transcription repressor DNA-binding - Winged helix-turn-helix transcription repressor DNA-binding; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G13980.1); Has 1245 Blast hits to 1235 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 256; Fungi - 110; Plants - 743; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
3
at3g05140
ROP binding protein kinases 2 - ROP binding protein kinases 2 (RBK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G18910.1); Has 106611 Blast hits to 105596 proteins in 3392 species: Archae - 84; Bacteria - 12146; Metazoa - 38869; Fungi - 8564; Plants - 31291; Viruses - 415; Other Eukaryotes - 15242 (source: NCBI BLink).
4
at3g14360
alpha/beta-Hydrolases superfamily protein - alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G42930.1); Has 1400 Blast hits to 1392 proteins in 294 species: Archae - 0; Bacteria - 352; Metazoa - 56; Fungi - 304; Plants - 428; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).
5
at4g01970
stachyose synthase Encodes a putative stachyose synthetase. stachyose synthase (STS); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: Raffinose synthase family protein (TAIR:AT5G40390.1); Has 728 Blast hits to 457 proteins in 130 species: Archae - 54; Bacteria - 106; Metazoa - 0; Fungi - 85; Plants - 472; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
6
at4g24660
homeobox protein 22 - homeobox protein 22 (HB22); CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 25 (TAIR:AT5G65410.1); Has 493 Blast hits to 471 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 490; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
7
at4g27250
NAD(P)-binding Rossmann-fold superfamily protein - NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: dihydroflavonol 4-reductase (TAIR:AT5G42800.1); Has 11174 Blast hits to 11160 proteins in 1934 species: Archae - 191; Bacteria - 4752; Metazoa - 248; Fungi - 837; Plants - 2457; Viruses - 63; Other Eukaryotes - 2626 (source: NCBI BLink).
8
at5g05550
sequence-specific DNA binding transcription factors - sequence-specific DNA binding transcription factors; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT3G11100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
9
at5g49990
Xanthine/uracil permease family protein - Xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil permease family protein (TAIR:AT5G62890.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

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Integrated Genome Informatics Research Unit