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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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m/z tolerance ±
AtMetExpress peak IDs
MS2T IDs
ReSpect accessions

Choosing cell X:" 6 " Y:" 3 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adp016566 LinkIcon Positive ATH11p07291 LinkIcon PS027201 LinkIcon 0.985
L-Glutamic acid; MS2; QqQ; positive; CE 10 V
   L-Glutamic acid
  Glu
  L-Glutamate
  alpha-Glutamic acid
  L-alpha-Aminoglutaric Acid
  (S)-2-Aminopentanedioic acid
  L-1-Aminopropane-1,3-dicarboxylic Acid
  1-Aminopropane-1,3-dicarboxylic acid
  Aciglut
  Glusate
  Glutacid
  Glutaminol
  Glutaton
ATH56p08332 LinkIcon PM018121 LinkIcon 0.982
4-Methylsulfinyl-n-butyl glucosinolate; MS2; Q-TOF; M+H; 15->55V
   4-Methylsulfinyl-n-butyl glucosinolate
  glucoraphanin
ATH11p08089 LinkIcon PS027201 LinkIcon 0.980
L-Glutamic acid; MS2; QqQ; positive; CE 10 V
   L-Glutamic acid
  Glu
  L-Glutamate
  alpha-Glutamic acid
  L-alpha-Aminoglutaric Acid
  (S)-2-Aminopentanedioic acid
  L-1-Aminopropane-1,3-dicarboxylic Acid
  1-Aminopropane-1,3-dicarboxylic acid
  Aciglut
  Glusate
  Glutacid
  Glutaminol
  Glutaton
ATH08p08536 LinkIcon PS027201 LinkIcon 0.972
L-Glutamic acid; MS2; QqQ; positive; CE 10 V
   L-Glutamic acid
  Glu
  L-Glutamate
  alpha-Glutamic acid
  L-alpha-Aminoglutaric Acid
  (S)-2-Aminopentanedioic acid
  L-1-Aminopropane-1,3-dicarboxylic Acid
  1-Aminopropane-1,3-dicarboxylic acid
  Aciglut
  Glusate
  Glutacid
  Glutaminol
  Glutaton
ATH06p07818 LinkIcon PS027201 LinkIcon 0.967
L-Glutamic acid; MS2; QqQ; positive; CE 10 V
   L-Glutamic acid
  Glu
  L-Glutamate
  alpha-Glutamic acid
  L-alpha-Aminoglutaric Acid
  (S)-2-Aminopentanedioic acid
  L-1-Aminopropane-1,3-dicarboxylic Acid
  1-Aminopropane-1,3-dicarboxylic acid
  Aciglut
  Glusate
  Glutacid
  Glutaminol
  Glutaton
ATH13p08477 LinkIcon PS027201 LinkIcon 0.958
L-Glutamic acid; MS2; QqQ; positive; CE 10 V
   L-Glutamic acid
  Glu
  L-Glutamate
  alpha-Glutamic acid
  L-alpha-Aminoglutaric Acid
  (S)-2-Aminopentanedioic acid
  L-1-Aminopropane-1,3-dicarboxylic Acid
  1-Aminopropane-1,3-dicarboxylic acid
  Aciglut
  Glusate
  Glutacid
  Glutaminol
  Glutaton
ATH63p10012 LinkIcon PS027201 LinkIcon 0.953
L-Glutamic acid; MS2; QqQ; positive; CE 10 V
   L-Glutamic acid
  Glu
  L-Glutamate
  alpha-Glutamic acid
  L-alpha-Aminoglutaric Acid
  (S)-2-Aminopentanedioic acid
  L-1-Aminopropane-1,3-dicarboxylic Acid
  1-Aminopropane-1,3-dicarboxylic acid
  Aciglut
  Glusate
  Glutacid
  Glutaminol
  Glutaton
ATH13p09565 LinkIcon PS027201 LinkIcon 0.946
L-Glutamic acid; MS2; QqQ; positive; CE 10 V
   L-Glutamic acid
  Glu
  L-Glutamate
  alpha-Glutamic acid
  L-alpha-Aminoglutaric Acid
  (S)-2-Aminopentanedioic acid
  L-1-Aminopropane-1,3-dicarboxylic Acid
  1-Aminopropane-1,3-dicarboxylic acid
  Aciglut
  Glusate
  Glutacid
  Glutaminol
  Glutaton
ATH63p10274 LinkIcon PS021801 LinkIcon 0.941
DL-threo-beta-Methylaspartic acid; MS2; QqQ; positive; CE 10 V
   DL-threo-beta-Methylaspartic acid
  beta-methylaspartate
  2-Amino-3-methylsuccinic acid
ATH56p07217 LinkIcon PS027201 LinkIcon 0.930
L-Glutamic acid; MS2; QqQ; positive; CE 10 V
   L-Glutamic acid
  Glu
  L-Glutamate
  alpha-Glutamic acid
  L-alpha-Aminoglutaric Acid
  (S)-2-Aminopentanedioic acid
  L-1-Aminopropane-1,3-dicarboxylic Acid
  1-Aminopropane-1,3-dicarboxylic acid
  Aciglut
  Glusate
  Glutacid
  Glutaminol
  Glutaton
ATH08p08537 LinkIcon - -
-
ATH12p07735 LinkIcon - -
-
ATH13p08720 LinkIcon - -
-
ATH58p09424 LinkIcon - -
-
ATH59p07349 LinkIcon - -
-
ATH59p07997 LinkIcon - -
-
ATH62p06877 LinkIcon - -
-

2. Gene information

No. ID Short description Curator summary Computational description
1
at1g11950
Transcription factor jumonji (jmjC) domain-containing protein - Transcription factor jumonji (jmjC) domain-containing protein; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G62310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
2
at1g30100
nine-cis-epoxycarotenoid dioxygenase 5 Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition. nine-cis-epoxycarotenoid dioxygenase 5 (NCED5); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 2 (TAIR:AT4G18350.1); Has 2882 Blast hits to 2845 proteins in 494 species: Archae - 16; Bacteria - 802; Metazoa - 232; Fungi - 202; Plants - 893; Viruses - 0; Other Eukaryotes - 737 (source: NCBI BLink).
3
at1g33420
RING/FYVE/PHD zinc finger superfamily protein - RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 734 Blast hits to 722 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 264; Plants - 211; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
4
at1g72040
P-loop containing nucleoside triphosphate hydrolases superfamily protein - P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxynucleoside kinase (InterPro:IPR002624); Has 2859 Blast hits to 2855 proteins in 704 species: Archae - 0; Bacteria - 1629; Metazoa - 493; Fungi - 0; Plants - 69; Viruses - 71; Other Eukaryotes - 597 (source: NCBI BLink).
5
at2g36350
Protein kinase superfamily protein - Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: KCBP-interacting protein kinase (TAIR:AT3G52890.2); Has 125358 Blast hits to 88611 proteins in 3507 species: Archae - 46; Bacteria - 15805; Metazoa - 50208; Fungi - 14670; Plants - 20571; Viruses - 390; Other Eukaryotes - 23668 (source: NCBI BLink).
6
at3g57880
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein - Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: endoplasmic reticulum, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (TAIR:AT1G51570.1); Has 5845 Blast hits to 4237 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 3557; Fungi - 274; Plants - 1573; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink).
7
at4g18910
NOD26-like intrinsic protein 1;2 Encodes an aquaporin homolog. Functions in arsenite transport and tolerance.When expressed in yeast cells can conduct hydrogen peroxide into those cells. NOD26-like intrinsic protein 1;2 (NIP1;2); FUNCTIONS IN: water channel activity, arsenite transmembrane transporter activity; INVOLVED IN: transport, hydrogen peroxide transmembrane transport, response to arsenic, arsenite transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NOD26-like major intrinsic protein 1 (TAIR:AT4G19030.1); Has 10753 Blast hits to 10647 proteins in 2223 species: Archae - 110; Bacteria - 5339; Metazoa - 1367; Fungi - 450; Plants - 2101; Viruses - 4; Other Eukaryotes - 1382 (source: NCBI BLink).
8
at4g36260
Lateral root primordium (LRP) protein-related A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Encodes protein with a single zinc finger motif and a members of a small gene family of putative transcription factors in which the SHORT INTERNODES (SHI) gene is found. STY2/STY1 double mutants showed defective style, stigma as well as serrated leaves. STYLISH 2 (STY2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: xylem and phloem pattern formation, style development, auxin homeostasis, negative regulation of gibberellic acid mediated signaling pathway, stigma development; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 4 (TAIR:AT2G18120.1); Has 2502 Blast hits to 2002 proteins in 224 species: Archae - 2; Bacteria - 961; Metazoa - 458; Fungi - 79; Plants - 348; Viruses - 38; Other Eukaryotes - 616 (source: NCBI BLink).
9
at5g41610
cation/H+ exchanger 18 member of Putative Na+/H+ antiporter family cation/H+ exchanger 18 (CHX18); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 17 (TAIR:AT4G23700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

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RIKEN Center for Sustainable Resource Science
Integrated Genome Informatics Research Unit