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 BL-SOM result
Position of SOM areas by tissue specificity of gene expression and metabolite accumulation. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
0 40 12 8 12 7 14 19 12 4 16 15 8 18 9 19 9 5 18 10 11 19 13 12 10 13 11 20 25 25 25
1 9 22 2 8 3 7 4 10 6 8 5 5 9 7 7 12 7 11 8 9 3 14 7 14 17 5 11 7 4 21
2 14 13 19 10 12 9 14 7 16 5 4 5 10 15 24 21 15 18 9 11 13 14 17 16 10 8 10 16 9 18
3 11 10 12 15 13 7 10 13 18 22 29 18 14 25 14 12 14 14 17 15 16 6 9 15 8 7 19 16 9 12
4 9 11 15 13 17 17 14 14 14 30 14 33 34 27 18 23 14 16 16 9 24 12 20 15 12 11 13 25 10 14
5 13 12 15 21 10 9 22 24 13 29 18 27 25 28 19 21 15 18 17 17 9 10 16 13 4 25 7 19 12 7
6 16 15 21 20 18 26 15 25 20 25 14 30 21 25 25 28 17 20 10 9 18 22 13 20 5 8 5 15 8 21
7 16 13 27 25 20 19 22 20 20 12 26 25 21 20 24 15 10 21 17 18 12 15 5 8 9 14 14 19 5 9
8 11 14 22 19 17 16 26 21 19 20 26 22 11 23 25 17 24 16 12 12 22 14 13 17 12 14 19 17 10 11
9 20 9 13 20 12 25 22 17 14 22 21 19 20 10 24 11 21 14 19 18 15 6 13 19 11 18 17 18 4 22
10 34 22 7 19 19 16 20 25 20 18 24 33 20 23 19 13 24 23 21 15 21 21 18 13 10 16 13 20 13 8
11 11 9 12 13 28 14 19 18 17 18 15 16 24 16 12 15 25 17 20 17 27 23 16 15 15 17 19 21 10 23
12 17 17 11 16 9 21 19 21 26 18 21 14 27 11 18 10 11 19 14 26 18 21 18 22 23 17 19 16 9 16
13 16 6 15 13 15 18 16 21 28 14 19 21 14 17 14 11 34 14 23 18 12 20 33 13 11 12 23 21 16 16
14 32 5 10 15 20 13 16 27 24 12 16 6 21 16 19 15 25 22 20 14 23 15 27 56 21 19 22 23 14 17
15 3 14 15 13 11 7 19 15 21 8 17 14 20 15 20 22 17 19 25 21 13 19 15 12 13 20 9 23 13 24
16 10 9 6 6 10 17 7 15 22 19 19 13 10 17 8 24 10 21 13 15 10 12 15 22 24 23 15 28 11 25
17 20 18 18 12 7 11 11 20 8 10 15 20 7 27 7 20 21 16 15 19 15 15 19 31 16 19 19 23 11 17
18 10 7 9 19 13 35 8 8 18 17 16 13 17 10 1 10 19 19 11 9 14 18 15 29 15 25 9 23 13 13
19 15 10 15 16 23 10 14 17 5 12 17 13 11 4 11 16 20 10 10 17 15 19 10 9 9 17 13 18 6 28
20 8 13 22 21 24 7 17 5 15 22 11 9 30 9 13 11 20 10 12 11 7 15 4 28 12 18 9 18 10 12
21 30 23 9 23 14 10 22 15 23 17 29 35 18 38 36 27 11 5 15 20 10 13 6 11 8 11 12 10 9 19
22 1 2 10 10 14 14 16 19 22 29 22 38 20 27 16 12 7 22 4 5 6 22 6 22 5 17 8 15 6 15
23 27 12 37 21 13 11 18 16 20 23 13 19 7 5 3 4 9 19 1 22 17 14 7 13 14 10 12 9 12 14
24 14 13 13 14 10 18 16 19 8 7 22 8 23 14 8 3 16 11 1 9 9 12 6 3 13 4 11 8 6 9
25 28 18 32 17 17 17 23 28 16 9 31 6 20 10 28 7 43 10 12 17 16 7 25 9 24 10 18 11 8 20
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Query M/Z
m/z tolerance ±
AtMetExpress peak IDs
MS2T IDs
ReSpect accessions

Choosing cell X:" 8 " Y:" 20 "

1. Metabolite information

No. AtMetExp ID Polality MS2T ID ReSpect
Accession Score Description
1 adn024941 LinkIcon Negative ATH14n05053 LinkIcon PS006007 LinkIcon 0.902
Sucrose; MS2; QqQ; negative; CE 10 V
   Sucrose
  Suc
  Fru(beta2-1alpha)Glc
  D-(+)-Saccharose
  Cane sugar
  alpha-D-Glucopyranosyl beta-D-fructofuranoside
  Microse
ATH06n02410 LinkIcon - -
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ATH06n03090 LinkIcon - -
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ATH06n03091 LinkIcon - -
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ATH07n02926 LinkIcon - -
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ATH07n03075 LinkIcon - -
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ATH07n03422 LinkIcon - -
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ATH08n05214 LinkIcon - -
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ATH08n05645 LinkIcon - -
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ATH08n05855 LinkIcon - -
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ATH10n02869 LinkIcon - -
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ATH10n02871 LinkIcon - -
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ATH10n03336 LinkIcon - -
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ATH11n02153 LinkIcon - -
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ATH12n01901 LinkIcon - -
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ATH12n01905 LinkIcon - -
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ATH12n02508 LinkIcon - -
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ATH13n04225 LinkIcon - -
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ATH14n04152 LinkIcon - -
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ATH14n04382 LinkIcon - -
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ATH14n04657 LinkIcon - -
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ATH56n05643 LinkIcon - -
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ATH56n05646 LinkIcon - -
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ATH56n06392 LinkIcon - -
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ATH57n05397 LinkIcon - -
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ATH57n05400 LinkIcon - -
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ATH57n06663 LinkIcon - -
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ATH58n05691 LinkIcon - -
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ATH58n06467 LinkIcon - -
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ATH59n06578 LinkIcon - -
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ATH60n05286 LinkIcon - -
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ATH60n06309 LinkIcon - -
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ATH61n05274 LinkIcon - -
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ATH62n04993 LinkIcon - -
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ATH62n06193 LinkIcon - -
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ATH63n05249 LinkIcon - -
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ATH63n05502 LinkIcon - -
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ATH64n05386 LinkIcon - -
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ATH64n05390 LinkIcon - -
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ATH64n06332 LinkIcon - -
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2 adn054092 LinkIcon Negative ATH07n09343 LinkIcon PM018061 LinkIcon 0.966
Pinoresinol-hexoside; MS2; Q-TOF; M-H; 15->55V
   Pinoresinol-hexoside
ATH60n14002 LinkIcon PM018061 LinkIcon 0.960
Pinoresinol-hexoside; MS2; Q-TOF; M-H; 15->55V
   Pinoresinol-hexoside
ATH07n09996 LinkIcon PM018061 LinkIcon 0.939
Pinoresinol-hexoside; MS2; Q-TOF; M-H; 15->55V
   Pinoresinol-hexoside
ATH59n13656 LinkIcon PM018061 LinkIcon 0.925
Pinoresinol-hexoside; MS2; Q-TOF; M-H; 15->55V
   Pinoresinol-hexoside
ATH59n14139 LinkIcon PM018061 LinkIcon 0.924
Pinoresinol-hexoside; MS2; Q-TOF; M-H; 15->55V
   Pinoresinol-hexoside
ATH58n14079 LinkIcon PM018061 LinkIcon 0.921
Pinoresinol-hexoside; MS2; Q-TOF; M-H; 15->55V
   Pinoresinol-hexoside
ATH64n12733 LinkIcon PM018061 LinkIcon 0.919
Pinoresinol-hexoside; MS2; Q-TOF; M-H; 15->55V
   Pinoresinol-hexoside
ATH64n13635 LinkIcon PM018061 LinkIcon 0.918
Pinoresinol-hexoside; MS2; Q-TOF; M-H; 15->55V
   Pinoresinol-hexoside
ATH60n13499 LinkIcon PM018061 LinkIcon 0.914
Pinoresinol-hexoside; MS2; Q-TOF; M-H; 15->55V
   Pinoresinol-hexoside
ATH58n15079 LinkIcon PM018061 LinkIcon 0.913
Pinoresinol-hexoside; MS2; Q-TOF; M-H; 15->55V
   Pinoresinol-hexoside
ATH10n08777 LinkIcon PM018061 LinkIcon 0.905
Pinoresinol-hexoside; MS2; Q-TOF; M-H; 15->55V
   Pinoresinol-hexoside
ATH57n14062 LinkIcon PM018061 LinkIcon 0.902
Pinoresinol-hexoside; MS2; Q-TOF; M-H; 15->55V
   Pinoresinol-hexoside
ATH10n09404 LinkIcon PM018061 LinkIcon 0.901
Pinoresinol-hexoside; MS2; Q-TOF; M-H; 15->55V
   Pinoresinol-hexoside
ATH06n07900 LinkIcon - -
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ATH06n07903 LinkIcon - -
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ATH06n08799 LinkIcon - -
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ATH06n09001 LinkIcon - -
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ATH08n12020 LinkIcon - -
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ATH08n12179 LinkIcon - -
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ATH09n11742 LinkIcon - -
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ATH12n06619 LinkIcon - -
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ATH13n11123 LinkIcon - -
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ATH14n10252 LinkIcon - -
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ATH14n10255 LinkIcon - -
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ATH14n10759 LinkIcon - -
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ATH14n10964 LinkIcon - -
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ATH56n13800 LinkIcon - -
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ATH56n14737 LinkIcon - -
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ATH57n14323 LinkIcon - -
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ATH58n14330 LinkIcon - -
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ATH59n14601 LinkIcon - -
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ATH61n12671 LinkIcon - -
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ATH62n12660 LinkIcon - -
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ATH62n13861 LinkIcon - -
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ATH63n13515 LinkIcon - -
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ATH64n13192 LinkIcon - -
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ATH64n13393 LinkIcon - -
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2. Gene information

No. ID Short description Curator summary Computational description
1
at1g12280
LRR and NB-ARC domains-containing disease resistance protein - LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 17827 Blast hits to 16139 proteins in 646 species: Archae - 26; Bacteria - 895; Metazoa - 2143; Fungi - 215; Plants - 14237; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).
2
at1g29720
Leucine-rich repeat transmembrane protein kinase - Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G29740.1); Has 108967 Blast hits to 107923 proteins in 3166 species: Archae - 87; Bacteria - 12310; Metazoa - 39616; Fungi - 9390; Plants - 31491; Viruses - 414; Other Eukaryotes - 15659 (source: NCBI BLink).
3
at1g35560
TCP family transcription factor - TCP family transcription factor ; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G72010.1); Has 382 Blast hits to 382 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 2; Plants - 349; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
4
at2g20570
GBF's pro-rich region-interacting factor 1 Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus. GBF's pro-rich region-interacting factor 1 (GPRI1); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: GOLDEN2-like 2 (TAIR:AT5G44190.1); Has 2420 Blast hits to 2125 proteins in 147 species: Archae - 0; Bacteria - 17; Metazoa - 163; Fungi - 64; Plants - 2094; Viruses - 12; Other Eukaryotes - 70 (source: NCBI BLink).
5
at2g46450
cyclic nucleotide-gated channel 12 Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner. cyclic nucleotide-gated channel 12 (CNGC12); CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channels (TAIR:AT2G46440.1); Has 2667 Blast hits to 2622 proteins in 213 species: Archae - 0; Bacteria - 16; Metazoa - 1408; Fungi - 0; Plants - 925; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).
6
at3g27925
DegP protease 1 Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition. DegP protease 1 (DEGP1); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis, protein catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: Trypsin family protein with PDZ domain (TAIR:AT5G39830.1); Has 16838 Blast hits to 16778 proteins in 2643 species: Archae - 108; Bacteria - 11023; Metazoa - 354; Fungi - 149; Plants - 421; Viruses - 7; Other Eukaryotes - 4776 (source: NCBI BLink).
7
at4g00050
basic helix-loop-helix (bHLH) DNA-binding superfamily protein - unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
8
at4g02420
Concanavalin A-like lectin protein kinase family protein - Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT4G02410.1); Has 115117 Blast hits to 113792 proteins in 4484 species: Archae - 103; Bacteria - 12860; Metazoa - 42338; Fungi - 9449; Plants - 33733; Viruses - 419; Other Eukaryotes - 16215 (source: NCBI BLink).
9
at4g08920
cryptochrome 1 Encodes CRY1, a flavin-type blue-light photoreceptor with ATP binding and autophosphorylation activity. Functions in perception of blue / green ratio of light. The photoreceptor may be involved in electron transport. Mutant phenotype displays a blue light-dependent inhibition of hypocotyl elongation. Photoreceptor activity requires light-induced homodimerisation of the N-terminal CNT1 domains of CRY1. Involved in blue-light induced stomatal opening. The C-terminal domain of the protein undergoes a light dependent conformational change. Also involved in response to circadian rhythm. Mutants exhibit long hypocotyl under blue light and are out of phase in their response to circadian rhythm. CRY1 is present in the nucleus and cytoplasm. Different subcellular pools of CRY1 have different functions during photomorphogenesis of Arabidopsis seedlings. cryptochrome 1 (CRY1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), Cryptochrome C-terminal (InterPro:IPR020978), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 2 (TAIR:AT1G04400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
10
at5g04490
vitamin E pathway gene 5 Encodes a protein with phytol kinase activity involved in tocopherol biosynthesis. vitamin E pathway gene 5 (VTE5); FUNCTIONS IN: phytol kinase activity, phosphatidate cytidylyltransferase activity; INVOLVED IN: vitamin E biosynthetic process, phospholipid biosynthetic process; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: Phosphatidate cytidylyltransferase family protein (TAIR:AT5G58560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
11
at5g49730
ferric reduction oxidase 6 Encodes a plasma membrane-located ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific manner. ferric reduction oxidase 6 (FRO6); CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), Cytochrome b245, heavy chain (InterPro:IPR000778), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: ferric reduction oxidase 7 (TAIR:AT5G49740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
12
at5g49740
ferric reduction oxidase 7 Encodes a chloroplast ferric chelate reductase. Shows differential splicing and has three different mRNA products. Expressed in the shoot, flower and cotyledon. ferric reduction oxidase 7 (FRO7); CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), Cytochrome b245, heavy chain (InterPro:IPR000778), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: ferric reduction oxidase 6 (TAIR:AT5G49730.1); Has 2776 Blast hits to 2646 proteins in 341 species: Archae - 2; Bacteria - 242; Metazoa - 695; Fungi - 1174; Plants - 485; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).
13
at5g56860
GATA type zinc finger transcription factor family protein Encodes a member of the GATA factor family of zinc finger transcription factors. GATA, nitrate-inducible, carbon metabolism-involved (GNC); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: cytokinin-responsive gata factor 1 (TAIR:AT4G26150.1); Has 1952 Blast hits to 1890 proteins in 209 species: Archae - 0; Bacteria - 2; Metazoa - 234; Fungi - 682; Plants - 707; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).

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Integrated Genome Informatics Research Unit